Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC107918.4-201ENST00000641966 3141 ntBASIC16.27■□□□□ 0.19
SHOX2O60902 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.27■□□□□ 0.19
SHOX2O60902 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHOX2O60902 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.26■□□□□ 0.19
SHOX2O60902 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHOX2O60902 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SHOX2O60902 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHOX2O60902 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.26■□□□□ 0.19
SHOX2O60902 ZBED1P1-201ENST00000502364 1930 ntBASIC16.26■□□□□ 0.19
SHOX2O60902 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.26■□□□□ 0.19
SHOX2O60902 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.26■□□□□ 0.19
SHOX2O60902 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.26■□□□□ 0.19
SHOX2O60902 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.26■□□□□ 0.19
SHOX2O60902 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHOX2O60902 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.26■□□□□ 0.19
SHOX2O60902 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.26■□□□□ 0.19
SHOX2O60902 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.26■□□□□ 0.19
SHOX2O60902 COX11P1-201ENST00000489116 835 ntBASIC16.26■□□□□ 0.19
SHOX2O60902 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.26■□□□□ 0.19
SHOX2O60902 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.26■□□□□ 0.19
SHOX2O60902 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHOX2O60902 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SHOX2O60902 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 LINC01230-201ENST00000625222 3017 ntBASIC16.26■□□□□ 0.19
SHOX2O60902 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHOX2O60902 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHOX2O60902 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.26■□□□□ 0.19
SHOX2O60902 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.25■□□□□ 0.19
SHOX2O60902 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 APP-205ENST00000358918 2366 ntTSL 5 BASIC16.25■□□□□ 0.19
SHOX2O60902 CICP17-201ENST00000418553 2377 ntBASIC16.25■□□□□ 0.19
SHOX2O60902 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 HAUS4P1-201ENST00000406739 1145 ntBASIC16.25■□□□□ 0.19
SHOX2O60902 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.25■□□□□ 0.19
SHOX2O60902 SIGLEC30P-201ENST00000455569 941 ntBASIC16.25■□□□□ 0.19
SHOX2O60902 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.25■□□□□ 0.19
SHOX2O60902 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
SHOX2O60902 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SHOX2O60902 AC139887.4-201ENST00000607877 719 ntBASIC16.25■□□□□ 0.19
SHOX2O60902 AC066615.1-201ENST00000640911 628 ntBASIC16.25■□□□□ 0.19
SHOX2O60902 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.25■□□□□ 0.19
SHOX2O60902 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SHOX2O60902 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHOX2O60902 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
SHOX2O60902 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.24■□□□□ 0.19
SHOX2O60902 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHOX2O60902 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms