Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 SPDYE13P-201ENST00000445314 798 ntBASIC11.93□□□□□ -0.5
SMKR1H3BMG3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 AC104581.4-201ENST00000623126 3052 ntBASIC11.93□□□□□ -0.5
SMKR1H3BMG3 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 TCAF2P1-201ENST00000291129 2421 ntBASIC11.92□□□□□ -0.5
SMKR1H3BMG3 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AC087481.3-201ENST00000602886 1894 ntBASIC11.92□□□□□ -0.5
SMKR1H3BMG3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AC117947.1-201ENST00000427448 529 ntBASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 MPDU1-223ENST00000582151 728 ntBASIC11.92□□□□□ -0.5
SMKR1H3BMG3 COPE-211ENST00000600932 1144 ntTSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AC010654.1-201ENST00000615722 808 ntBASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AL590326.2-201ENST00000625139 305 ntBASIC11.92□□□□□ -0.5
SMKR1H3BMG3 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC11.92□□□□□ -0.5
SMKR1H3BMG3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
SMKR1H3BMG3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms