Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM43Q96BQ3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AL591846.1-201ENST00000451736 433 ntBASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AKR7A2P1-201ENST00000460134 915 ntBASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AC023310.1-201ENST00000554836 735 ntBASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 MIR6727-201ENST00000620702 65 ntBASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AL008638.5-201ENST00000623814 1298 ntBASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.43■□□□□ 0.38
TRIM43Q96BQ3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 AC007969.1-201ENST00000433675 447 ntBASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 C2orf27AP3-201ENST00000434123 579 ntBASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 AL354718.3-201ENST00000616414 581 ntBASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 CR382287.1-201ENST00000623954 586 ntBASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 AC244452.3-201ENST00000636814 210 ntBASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM43Q96BQ3 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 Z93015.1-201ENST00000451718 390 ntBASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 AC015967.2-201ENST00000624092 234 ntBASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 AC006435.4-201ENST00000625037 234 ntBASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 AL356737.1-201ENST00000634391 234 ntBASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM43Q96BQ3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms