Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.29□□□□□ -0.44
FOXA3P55318 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.29□□□□□ -0.44
FOXA3P55318 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 MMP23A-201ENST00000234610 1017 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 HBZP1-201ENST00000354915 429 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
FOXA3P55318 SLC25A3P1-201ENST00000443844 931 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 NUS1P1-201ENST00000446295 882 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 SIGLEC30P-201ENST00000455569 941 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
FOXA3P55318 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 AC009533.2-201ENST00000543664 586 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 RNF126P1-202ENST00000569893 925 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 TERC-201ENST00000602385 541 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 AC010654.1-201ENST00000615722 808 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC12.29□□□□□ -0.44
FOXA3P55318 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.29□□□□□ -0.44
FOXA3P55318 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
FOXA3P55318 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
FOXA3P55318 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.44
FOXA3P55318 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 Z83836.1-201ENST00000624605 1642 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
FOXA3P55318 TOP3BP1-201ENST00000420768 1380 ntBASIC12.29□□□□□ -0.44
FOXA3P55318 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
FOXA3P55318 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.28□□□□□ -0.44
FOXA3P55318 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
FOXA3P55318 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
FOXA3P55318 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 MEG3-211ENST00000452514 461 ntTSL 3 BASIC12.28□□□□□ -0.44
FOXA3P55318 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC12.28□□□□□ -0.44
FOXA3P55318 TMA16-209ENST00000513272 803 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
FOXA3P55318 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.28□□□□□ -0.44
FOXA3P55318 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC12.28□□□□□ -0.44
FOXA3P55318 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
FOXA3P55318 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.28□□□□□ -0.44
FOXA3P55318 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
FOXA3P55318 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
FOXA3P55318 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.27□□□□□ -0.44
FOXA3P55318 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.27□□□□□ -0.44
FOXA3P55318 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
FOXA3P55318 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
FOXA3P55318 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
FOXA3P55318 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
FOXA3P55318 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.44
FOXA3P55318 AC092919.2-201ENST00000623631 1645 ntBASIC12.27□□□□□ -0.44
FOXA3P55318 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
FOXA3P55318 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms