Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
TOP3BO95985 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.74■□□□□ 0.27
TOP3BO95985 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TOP3BO95985 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.73■□□□□ 0.27
TOP3BO95985 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.73■□□□□ 0.27
TOP3BO95985 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
TOP3BO95985 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.73■□□□□ 0.27
TOP3BO95985 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.73■□□□□ 0.27
TOP3BO95985 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.73■□□□□ 0.27
TOP3BO95985 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 FO538757.1-201ENST00000623083 1397 ntBASIC16.73■□□□□ 0.27
TOP3BO95985 AC006277.1-201ENST00000624348 1610 ntBASIC16.73■□□□□ 0.27
TOP3BO95985 AL021920.2-201ENST00000624828 1351 ntBASIC16.73■□□□□ 0.27
TOP3BO95985 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.73■□□□□ 0.27
TOP3BO95985 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TOP3BO95985 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.73■□□□□ 0.27
TOP3BO95985 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
TOP3BO95985 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 AC010491.1-201ENST00000563101 2797 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.72■□□□□ 0.27
TOP3BO95985 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.72■□□□□ 0.27
TOP3BO95985 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TOP3BO95985 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 AC005237.2-201ENST00000434368 219 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 CNN2P2-201ENST00000443536 909 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 CNN2P3-201ENST00000450201 906 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.72■□□□□ 0.27
TOP3BO95985 KRT8P48-201ENST00000515599 1220 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 SLC25A39P2-201ENST00000537614 270 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.72■□□□□ 0.27
TOP3BO95985 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.72■□□□□ 0.27
TOP3BO95985 AL353135.1-201ENST00000606729 504 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 AL136317.3-201ENST00000618497 906 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TOP3BO95985 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TOP3BO95985 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.72■□□□□ 0.27
TOP3BO95985 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TOP3BO95985 MTHFR-217ENST00000641820 1569 ntBASIC16.72■□□□□ 0.27
TOP3BO95985 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.72■□□□□ 0.27
TOP3BO95985 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TOP3BO95985 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
TOP3BO95985 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TOP3BO95985 TUBB3P1-201ENST00000405796 1332 ntBASIC16.71■□□□□ 0.27
TOP3BO95985 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TOP3BO95985 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TOP3BO95985 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
TOP3BO95985 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.71■□□□□ 0.27
TOP3BO95985 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TOP3BO95985 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TOP3BO95985 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TOP3BO95985 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.71■□□□□ 0.27
TOP3BO95985 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.71■□□□□ 0.27
TOP3BO95985 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.71■□□□□ 0.27
TOP3BO95985 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TOP3BO95985 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms