Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 GAD2-202ENST00000376248 680 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 AL137013.1-201ENST00000432946 1228 ntBASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 STK25P1-201ENST00000585406 838 ntBASIC12.32□□□□□ -0.44
HLA-DQA1P01909 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 LINC01023-201ENST00000606054 436 ntBASIC12.32□□□□□ -0.44
HLA-DQA1P01909 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 AC013726.1-201ENST00000563747 2285 ntBASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 FOS-208ENST00000555686 1496 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 AL671710.1-201ENST00000610245 2349 ntBASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 AL391807.1-203ENST00000604392 2365 ntBASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 CICP14-201ENST00000629111 2732 ntBASIC12.31□□□□□ -0.44
HLA-DQA1P01909 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 AC005332.3-201ENST00000589904 676 ntBASIC12.31□□□□□ -0.44
HLA-DQA1P01909 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DQA1P01909 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms