Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.84■□□□□ 0.13
LDLRP01130 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.84■□□□□ 0.13
LDLRP01130 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 SPCS2P1-201ENST00000561636 679 ntBASIC15.84■□□□□ 0.13
LDLRP01130 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.84■□□□□ 0.13
LDLRP01130 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.84■□□□□ 0.13
LDLRP01130 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
LDLRP01130 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.84■□□□□ 0.13
LDLRP01130 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
LDLRP01130 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.84■□□□□ 0.13
LDLRP01130 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
LDLRP01130 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.84■□□□□ 0.13
LDLRP01130 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDLRP01130 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDLRP01130 AL603832.2-201ENST00000566195 2125 ntBASIC15.83■□□□□ 0.13
LDLRP01130 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LDLRP01130 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.83■□□□□ 0.13
LDLRP01130 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDLRP01130 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDLRP01130 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDLRP01130 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LDLRP01130 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LDLRP01130 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.83■□□□□ 0.13
LDLRP01130 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 AC073621.1-201ENST00000392730 636 ntBASIC15.83■□□□□ 0.12
LDLRP01130 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.83■□□□□ 0.12
LDLRP01130 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.83■□□□□ 0.12
LDLRP01130 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 BX005266.1-201ENST00000473402 457 ntBASIC15.83■□□□□ 0.12
LDLRP01130 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
LDLRP01130 AL022326.1-202ENST00000641533 845 ntBASIC15.83■□□□□ 0.12
LDLRP01130 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
LDLRP01130 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.83■□□□□ 0.12
LDLRP01130 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.83■□□□□ 0.12
LDLRP01130 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.83■□□□□ 0.12
LDLRP01130 AC009336.1-201ENST00000608941 1553 ntBASIC15.83■□□□□ 0.12
LDLRP01130 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
LDLRP01130 LINC00895-201ENST00000629028 1637 ntBASIC15.83■□□□□ 0.12
LDLRP01130 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDLRP01130 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.82■□□□□ 0.12
LDLRP01130 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms