Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX4Q9UIU6 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 RPL37AP1-201ENST00000412502 279 ntBASIC17.38■□□□□ 0.37
SIX4Q9UIU6 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 AC138932.1-201ENST00000534164 6830 ntBASIC17.38■□□□□ 0.37
SIX4Q9UIU6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX4Q9UIU6 AL691432.1-201ENST00000596308 1422 ntBASIC17.38■□□□□ 0.37
SIX4Q9UIU6 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AL080243.2-201ENST00000418783 582 ntBASIC17.37■□□□□ 0.37
SIX4Q9UIU6 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AL139010.1-201ENST00000454878 894 ntBASIC17.37■□□□□ 0.37
SIX4Q9UIU6 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 HLA-V-204ENST00000476601 1289 ntBASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AL079307.3-201ENST00000556114 283 ntBASIC17.37■□□□□ 0.37
SIX4Q9UIU6 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 AC073592.8-201ENST00000624126 511 ntBASIC17.37■□□□□ 0.37
SIX4Q9UIU6 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX4Q9UIU6 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 CYP4F24P-201ENST00000586049 1580 ntBASIC17.36■□□□□ 0.37
SIX4Q9UIU6 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 HMGN1P19-201ENST00000436976 333 ntBASIC17.36■□□□□ 0.37
SIX4Q9UIU6 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SIX4Q9UIU6 AC026979.3-201ENST00000607315 403 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms