Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 ELK2AP-201ENST00000392510 1007 ntBASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 AC006033.1-201ENST00000440505 426 ntBASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 ATF5-205ENST00000600336 682 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT28Q7Z3Y7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 TPO-206ENST00000382269 1155 ntTSL 5 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 VDAC1P7-201ENST00000462417 847 ntBASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 RPL13AP25-201ENST00000484130 612 ntBASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 KRT90P-201ENST00000549264 1064 ntBASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 AC005252.2-201ENST00000624630 1141 ntBASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT28Q7Z3Y7 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 BCL2-203ENST00000589955 5011 ntBASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 AP001063.1-201ENST00000568332 529 ntBASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 PPA1-206ENST00000625364 644 ntTSL 5 BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 AC008687.7-202ENST00000637404 953 ntBASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT28Q7Z3Y7 LETM1P2-201ENST00000597330 2178 ntBASIC21.77■■□□□ 1.07
KRT28Q7Z3Y7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
KRT28Q7Z3Y7 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC21.76■■□□□ 1.07
KRT28Q7Z3Y7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.76■■□□□ 1.07
KRT28Q7Z3Y7 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT28Q7Z3Y7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT28Q7Z3Y7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT28Q7Z3Y7 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
KRT28Q7Z3Y7 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT28Q7Z3Y7 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms