Protein–RNA interactions for Protein: A2RUB6

CCDC66, Coiled-coil domain-containing protein 66, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66A2RUB6 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC66A2RUB6 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC66A2RUB6 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 MIR3180-1-201ENST00000580374 94 ntBASIC17.81■□□□□ 0.44
CCDC66A2RUB6 MIR3180-3-201ENST00000584616 94 ntBASIC17.81■□□□□ 0.44
CCDC66A2RUB6 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC66A2RUB6 OR2I1P-209ENST00000641730 5365 ntBASIC17.8■□□□□ 0.44
CCDC66A2RUB6 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 AP000867.3-201ENST00000524675 377 ntBASIC17.8■□□□□ 0.44
CCDC66A2RUB6 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC66A2RUB6 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 AC139749.1-202ENST00000617529 3139 ntBASIC17.79■□□□□ 0.44
CCDC66A2RUB6 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC66A2RUB6 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms