Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
CCDC42Q96M95 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC42Q96M95 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC42Q96M95 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC42Q96M95 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC42Q96M95 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
CCDC42Q96M95 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC42Q96M95 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 AC073347.1-201ENST00000421633 2643 ntBASIC17.69■□□□□ 0.42
CCDC42Q96M95 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.69■□□□□ 0.42
CCDC42Q96M95 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC42Q96M95 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 AC022532.1-201ENST00000624563 1728 ntBASIC17.69■□□□□ 0.42
CCDC42Q96M95 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC42Q96M95 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 AC012569.1-201ENST00000591191 1524 ntBASIC17.68■□□□□ 0.42
CCDC42Q96M95 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC42Q96M95 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC42Q96M95 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms