Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 RET-205ENST00000615310 4337 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
LINC00643Q86TS7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 RER1-204ENST00000378518 522 ntTSL 3 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 MIR648-201ENST00000385046 94 ntBASIC10.18□□□□□ -0.78
LINC00643Q86TS7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 CICP11-201ENST00000434745 2827 ntBASIC10.18□□□□□ -0.78
LINC00643Q86TS7 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 NIN-202ENST00000324330 4364 ntTSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
LINC00643Q86TS7 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
LINC00643Q86TS7 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC10.17□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms