Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SPCS3P61009 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SPCS3P61009 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.44□□□□□ -0.26
SPCS3P61009 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SPCS3P61009 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SPCS3P61009 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SPCS3P61009 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.44□□□□□ -0.26
SPCS3P61009 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SPCS3P61009 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.44□□□□□ -0.26
SPCS3P61009 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.43□□□□□ -0.26
SPCS3P61009 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.43□□□□□ -0.26
SPCS3P61009 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 AC092384.3-202ENST00000564646 2873 ntBASIC13.43□□□□□ -0.26
SPCS3P61009 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
SPCS3P61009 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.43□□□□□ -0.26
SPCS3P61009 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.43□□□□□ -0.26
SPCS3P61009 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC13.43□□□□□ -0.26
SPCS3P61009 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 MIR5100-201ENST00000579544 119 ntBASIC13.43□□□□□ -0.26
SPCS3P61009 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC13.43□□□□□ -0.26
SPCS3P61009 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC13.43□□□□□ -0.26
SPCS3P61009 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC13.43□□□□□ -0.26
SPCS3P61009 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.43□□□□□ -0.26
SPCS3P61009 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SPCS3P61009 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
SPCS3P61009 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
SPCS3P61009 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
SPCS3P61009 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SPCS3P61009 AL512652.2-201ENST00000625156 1716 ntBASIC13.42□□□□□ -0.26
SPCS3P61009 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
SPCS3P61009 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
SPCS3P61009 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.42□□□□□ -0.26
SPCS3P61009 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.42□□□□□ -0.26
SPCS3P61009 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
SPCS3P61009 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
SPCS3P61009 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SPCS3P61009 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC13.42□□□□□ -0.26
SPCS3P61009 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.42□□□□□ -0.26
SPCS3P61009 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.42□□□□□ -0.26
SPCS3P61009 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 POU5F1P6-201ENST00000466990 990 ntBASIC13.42□□□□□ -0.26
SPCS3P61009 MPI-205ENST00000562606 1052 ntTSL 3 BASIC13.42□□□□□ -0.26
SPCS3P61009 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.42□□□□□ -0.26
SPCS3P61009 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SPCS3P61009 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SPCS3P61009 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.42□□□□□ -0.26
SPCS3P61009 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.42□□□□□ -0.26
SPCS3P61009 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 SNX33P1-201ENST00000592116 1762 ntBASIC13.42□□□□□ -0.26
SPCS3P61009 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
SPCS3P61009 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms