Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.34■□□□□ 0.21
MSH3P20585 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.34■□□□□ 0.21
MSH3P20585 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.34■□□□□ 0.21
MSH3P20585 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
MSH3P20585 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MSH3P20585 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
MSH3P20585 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
MSH3P20585 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.34■□□□□ 0.21
MSH3P20585 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSH3P20585 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.34■□□□□ 0.21
MSH3P20585 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.33■□□□□ 0.21
MSH3P20585 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 ALOX12P2-203ENST00000570921 1945 ntBASIC16.33■□□□□ 0.21
MSH3P20585 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
MSH3P20585 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSH3P20585 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.33■□□□□ 0.2
MSH3P20585 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.33■□□□□ 0.2
MSH3P20585 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
MSH3P20585 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 ADH5P3-201ENST00000433842 1137 ntBASIC16.33■□□□□ 0.2
MSH3P20585 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
MSH3P20585 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 AC026691.1-201ENST00000602502 2017 ntBASIC16.33■□□□□ 0.2
MSH3P20585 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
MSH3P20585 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSH3P20585 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
MSH3P20585 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.32■□□□□ 0.2
MSH3P20585 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.32■□□□□ 0.2
MSH3P20585 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.32■□□□□ 0.2
MSH3P20585 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 IGHV3-62-201ENST00000520057 340 ntBASIC16.32■□□□□ 0.2
MSH3P20585 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.32■□□□□ 0.2
MSH3P20585 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.32■□□□□ 0.2
MSH3P20585 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.32■□□□□ 0.2
MSH3P20585 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.32■□□□□ 0.2
MSH3P20585 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
MSH3P20585 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSH3P20585 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.32■□□□□ 0.2
MSH3P20585 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms