Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
VIMP08670 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.55■□□□□ 0.24
VIMP08670 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.55■□□□□ 0.24
VIMP08670 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.55■□□□□ 0.24
VIMP08670 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.55■□□□□ 0.24
VIMP08670 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VIMP08670 AP002414.1-201ENST00000391405 1147 ntBASIC16.55■□□□□ 0.24
VIMP08670 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.55■□□□□ 0.24
VIMP08670 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 AL359075.1-203ENST00000462729 1002 ntBASIC16.55■□□□□ 0.24
VIMP08670 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 AL355075.4-201ENST00000554988 638 ntBASIC16.55■□□□□ 0.24
VIMP08670 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.55■□□□□ 0.24
VIMP08670 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.55■□□□□ 0.24
VIMP08670 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 AL138831.2-201ENST00000606564 490 ntBASIC16.55■□□□□ 0.24
VIMP08670 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VIMP08670 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VIMP08670 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VIMP08670 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.55■□□□□ 0.24
VIMP08670 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.54■□□□□ 0.24
VIMP08670 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VIMP08670 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VIMP08670 KRT18P22-201ENST00000402024 1347 ntBASIC16.54■□□□□ 0.24
VIMP08670 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.54■□□□□ 0.24
VIMP08670 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.54■□□□□ 0.24
VIMP08670 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.54■□□□□ 0.24
VIMP08670 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.54■□□□□ 0.24
VIMP08670 POU5F1P6-201ENST00000466990 990 ntBASIC16.54■□□□□ 0.24
VIMP08670 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.54■□□□□ 0.24
VIMP08670 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VIMP08670 Z83836.1-201ENST00000624605 1642 ntBASIC16.54■□□□□ 0.24
VIMP08670 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.54■□□□□ 0.24
VIMP08670 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VIMP08670 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
VIMP08670 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.54■□□□□ 0.24
VIMP08670 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.54■□□□□ 0.24
VIMP08670 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.54■□□□□ 0.24
VIMP08670 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VIMP08670 AL109954.1-202ENST00000564051 2148 ntBASIC16.54■□□□□ 0.24
VIMP08670 SNX33P1-201ENST00000592116 1762 ntBASIC16.54■□□□□ 0.24
VIMP08670 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VIMP08670 CICP24-201ENST00000605464 2705 ntBASIC16.54■□□□□ 0.24
VIMP08670 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VIMP08670 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
VIMP08670 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VIMP08670 AC023908.3-201ENST00000564211 3047 ntBASIC16.54■□□□□ 0.24
VIMP08670 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
VIMP08670 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VIMP08670 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms