Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4BO75351 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4BO75351 MIR4469-201ENST00000583919 79 ntBASIC16.14■□□□□ 0.17
VPS4BO75351 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VPS4BO75351 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS4BO75351 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4BO75351 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS4BO75351 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS4BO75351 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
VPS4BO75351 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS4BO75351 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VPS4BO75351 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS4BO75351 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 AL603832.2-201ENST00000566195 2125 ntBASIC16.13■□□□□ 0.17
VPS4BO75351 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS4BO75351 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS4BO75351 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VPS4BO75351 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.13■□□□□ 0.17
VPS4BO75351 AP002472.1-201ENST00000577490 586 ntBASIC16.13■□□□□ 0.17
VPS4BO75351 AC006557.2-201ENST00000592985 1240 ntBASIC16.13■□□□□ 0.17
VPS4BO75351 AC239800.4-201ENST00000603712 296 ntBASIC16.13■□□□□ 0.17
VPS4BO75351 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS4BO75351 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
VPS4BO75351 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS4BO75351 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS4BO75351 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS4BO75351 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
VPS4BO75351 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 MIR770-201ENST00000390219 98 ntBASIC16.12■□□□□ 0.17
VPS4BO75351 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.12■□□□□ 0.17
VPS4BO75351 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS4BO75351 AC108751.1-201ENST00000490852 363 ntBASIC16.12■□□□□ 0.17
VPS4BO75351 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.12■□□□□ 0.17
VPS4BO75351 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS4BO75351 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VPS4BO75351 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS4BO75351 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
VPS4BO75351 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS4BO75351 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms