Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
ERCC4Q92889 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.7■□□□□ 0.58
ERCC4Q92889 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.7■□□□□ 0.58
ERCC4Q92889 RPS2P1-201ENST00000434010 821 ntBASIC18.7■□□□□ 0.58
ERCC4Q92889 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.7■□□□□ 0.58
ERCC4Q92889 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.7■□□□□ 0.58
ERCC4Q92889 PRELID1P1-202ENST00000567272 903 ntBASIC18.7■□□□□ 0.58
ERCC4Q92889 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 PCGF3-213ENST00000620529 1899 ntBASIC18.7■□□□□ 0.58
ERCC4Q92889 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.7■□□□□ 0.58
ERCC4Q92889 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
ERCC4Q92889 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.7■□□□□ 0.58
ERCC4Q92889 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ERCC4Q92889 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
ERCC4Q92889 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC18.69■□□□□ 0.58
ERCC4Q92889 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
ERCC4Q92889 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.69■□□□□ 0.58
ERCC4Q92889 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.69■□□□□ 0.58
ERCC4Q92889 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.69■□□□□ 0.58
ERCC4Q92889 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.69■□□□□ 0.58
ERCC4Q92889 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
ERCC4Q92889 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
ERCC4Q92889 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.69■□□□□ 0.58
ERCC4Q92889 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.69■□□□□ 0.58
ERCC4Q92889 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
ERCC4Q92889 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
ERCC4Q92889 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ERCC4Q92889 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.69■□□□□ 0.58
ERCC4Q92889 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ERCC4Q92889 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.68■□□□□ 0.58
ERCC4Q92889 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
ERCC4Q92889 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ERCC4Q92889 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.68■□□□□ 0.58
ERCC4Q92889 DUSP5P1-201ENST00000441325 1139 ntBASIC18.68■□□□□ 0.58
ERCC4Q92889 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.68■□□□□ 0.58
ERCC4Q92889 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.68■□□□□ 0.58
ERCC4Q92889 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.68■□□□□ 0.58
ERCC4Q92889 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.68■□□□□ 0.58
ERCC4Q92889 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.68■□□□□ 0.58
ERCC4Q92889 AL805961.1-202ENST00000641562 540 ntBASIC18.68■□□□□ 0.58
ERCC4Q92889 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.68■□□□□ 0.58
ERCC4Q92889 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms