Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC188H7C350 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC188H7C350 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC188H7C350 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 AC005622.1-201ENST00000636801 1703 ntBASIC17.13■□□□□ 0.33
CCDC188H7C350 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
CCDC188H7C350 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC188H7C350 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC188H7C350 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC188H7C350 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 ARMC10P1-201ENST00000313754 855 ntBASIC17.13■□□□□ 0.33
CCDC188H7C350 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 PCED1CP-201ENST00000419887 785 ntBASIC17.13■□□□□ 0.33
CCDC188H7C350 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.13■□□□□ 0.33
CCDC188H7C350 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC188H7C350 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.13■□□□□ 0.33
CCDC188H7C350 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC188H7C350 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
CCDC188H7C350 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC188H7C350 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC188H7C350 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC188H7C350 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC188H7C350 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 AL805961.1-202ENST00000641562 540 ntBASIC17.12■□□□□ 0.33
CCDC188H7C350 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC188H7C350 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 SSR4P1-203ENST00000599569 2260 ntBASIC17.12■□□□□ 0.33
CCDC188H7C350 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC188H7C350 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC188H7C350 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC188H7C350 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC188H7C350 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC188H7C350 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC188H7C350 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC188H7C350 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC188H7C350 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
CCDC188H7C350 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC188H7C350 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms