Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.11■■□□□ 1.13
COMMD3-BMI1R4GMX3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 DUX4L29-201ENST00000425409 679 ntBASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.1■■□□□ 1.13
COMMD3-BMI1R4GMX3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COMMD3-BMI1R4GMX3 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COMMD3-BMI1R4GMX3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COMMD3-BMI1R4GMX3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COMMD3-BMI1R4GMX3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COMMD3-BMI1R4GMX3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COMMD3-BMI1R4GMX3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.08■■□□□ 1.13
COMMD3-BMI1R4GMX3 AC010501.1-201ENST00000606270 1962 ntBASIC22.08■■□□□ 1.12
COMMD3-BMI1R4GMX3 AC096887.2-201ENST00000623443 1957 ntBASIC22.08■■□□□ 1.12
COMMD3-BMI1R4GMX3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
COMMD3-BMI1R4GMX3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
COMMD3-BMI1R4GMX3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
COMMD3-BMI1R4GMX3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.07■■□□□ 1.12
COMMD3-BMI1R4GMX3 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.07■■□□□ 1.12
COMMD3-BMI1R4GMX3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.07■■□□□ 1.12
COMMD3-BMI1R4GMX3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
COMMD3-BMI1R4GMX3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.06■■□□□ 1.12
COMMD3-BMI1R4GMX3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.05■■□□□ 1.12
COMMD3-BMI1R4GMX3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COMMD3-BMI1R4GMX3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.05■■□□□ 1.12
COMMD3-BMI1R4GMX3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 SLC25A24-204ENST00000569674 2357 ntBASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COMMD3-BMI1R4GMX3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COMMD3-BMI1R4GMX3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COMMD3-BMI1R4GMX3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
COMMD3-BMI1R4GMX3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COMMD3-BMI1R4GMX3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COMMD3-BMI1R4GMX3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.02■■□□□ 1.12
COMMD3-BMI1R4GMX3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
COMMD3-BMI1R4GMX3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.01■■□□□ 1.11
COMMD3-BMI1R4GMX3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COMMD3-BMI1R4GMX3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22■■□□□ 1.11
COMMD3-BMI1R4GMX3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COMMD3-BMI1R4GMX3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22■■□□□ 1.11
COMMD3-BMI1R4GMX3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms