Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK1Q99986 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VRK1Q99986 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VRK1Q99986 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
VRK1Q99986 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VRK1Q99986 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 AC010980.1-201ENST00000587192 1142 ntBASIC20.72■□□□□ 0.91
VRK1Q99986 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.72■□□□□ 0.91
VRK1Q99986 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
VRK1Q99986 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
VRK1Q99986 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
VRK1Q99986 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.71■□□□□ 0.91
VRK1Q99986 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK1Q99986 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK1Q99986 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VRK1Q99986 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VRK1Q99986 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.7■□□□□ 0.9
VRK1Q99986 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VRK1Q99986 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
VRK1Q99986 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK1Q99986 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.7■□□□□ 0.9
VRK1Q99986 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VRK1Q99986 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VRK1Q99986 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.7■□□□□ 0.9
VRK1Q99986 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
VRK1Q99986 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VRK1Q99986 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.69■□□□□ 0.9
VRK1Q99986 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.69■□□□□ 0.9
VRK1Q99986 AC074183.2-201ENST00000623112 922 ntBASIC20.69■□□□□ 0.9
VRK1Q99986 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
VRK1Q99986 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VRK1Q99986 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.69■□□□□ 0.9
VRK1Q99986 KRT8P33-201ENST00000508125 1423 ntBASIC20.69■□□□□ 0.9
VRK1Q99986 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.69■□□□□ 0.9
VRK1Q99986 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VRK1Q99986 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.69■□□□□ 0.9
VRK1Q99986 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VRK1Q99986 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.68■□□□□ 0.9
VRK1Q99986 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.68■□□□□ 0.9
VRK1Q99986 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VRK1Q99986 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VRK1Q99986 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.67■□□□□ 0.9
VRK1Q99986 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VRK1Q99986 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VRK1Q99986 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VRK1Q99986 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.67■□□□□ 0.9
VRK1Q99986 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VRK1Q99986 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
VRK1Q99986 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VRK1Q99986 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VRK1Q99986 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VRK1Q99986 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
VRK1Q99986 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.65■□□□□ 0.9
VRK1Q99986 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.65■□□□□ 0.9
VRK1Q99986 DUSP8P4-201ENST00000399538 1761 ntBASIC20.65■□□□□ 0.9
VRK1Q99986 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VRK1Q99986 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.65■□□□□ 0.9
VRK1Q99986 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.65■□□□□ 0.9
VRK1Q99986 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VRK1Q99986 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.65■□□□□ 0.9
VRK1Q99986 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VRK1Q99986 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VRK1Q99986 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
VRK1Q99986 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VRK1Q99986 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VRK1Q99986 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.64■□□□□ 0.89
VRK1Q99986 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VRK1Q99986 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VRK1Q99986 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VRK1Q99986 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.63■□□□□ 0.89
VRK1Q99986 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
VRK1Q99986 AP004609.3-201ENST00000610705 1884 ntBASIC20.63■□□□□ 0.89
VRK1Q99986 YBX1P4-201ENST00000392794 808 ntBASIC20.63■□□□□ 0.89
VRK1Q99986 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
VRK1Q99986 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VRK1Q99986 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK1Q99986 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.62■□□□□ 0.89
VRK1Q99986 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK1Q99986 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK1Q99986 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK1Q99986 AC142472.1-201ENST00000612013 1741 ntBASIC20.62■□□□□ 0.89
VRK1Q99986 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.62■□□□□ 0.89
VRK1Q99986 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.62■□□□□ 0.89
VRK1Q99986 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.62■□□□□ 0.89
VRK1Q99986 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK1Q99986 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.62■□□□□ 0.89
VRK1Q99986 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VRK1Q99986 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.62■□□□□ 0.89
VRK1Q99986 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VRK1Q99986 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VRK1Q99986 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
VRK1Q99986 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VRK1Q99986 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK1Q99986 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms