Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.74■□□□□ 0.91
LINC01560Q8TB33 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LINC01560Q8TB33 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LINC01560Q8TB33 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LINC01560Q8TB33 MIR4281-201ENST00000580852 62 ntBASIC20.73■□□□□ 0.91
LINC01560Q8TB33 AC092028.1-203ENST00000608262 953 ntBASIC20.73■□□□□ 0.91
LINC01560Q8TB33 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.73■□□□□ 0.91
LINC01560Q8TB33 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LINC01560Q8TB33 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LINC01560Q8TB33 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
LINC01560Q8TB33 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.71■□□□□ 0.91
LINC01560Q8TB33 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
LINC01560Q8TB33 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.71■□□□□ 0.91
LINC01560Q8TB33 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LINC01560Q8TB33 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.71■□□□□ 0.91
LINC01560Q8TB33 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.7■□□□□ 0.9
LINC01560Q8TB33 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.7■□□□□ 0.9
LINC01560Q8TB33 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.68■□□□□ 0.9
LINC01560Q8TB33 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.68■□□□□ 0.9
LINC01560Q8TB33 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.68■□□□□ 0.9
LINC01560Q8TB33 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
LINC01560Q8TB33 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LINC01560Q8TB33 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.67■□□□□ 0.9
LINC01560Q8TB33 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LINC01560Q8TB33 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LINC01560Q8TB33 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LINC01560Q8TB33 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
LINC01560Q8TB33 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.66■□□□□ 0.9
LINC01560Q8TB33 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.66■□□□□ 0.9
LINC01560Q8TB33 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LINC01560Q8TB33 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
LINC01560Q8TB33 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LINC01560Q8TB33 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LINC01560Q8TB33 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
LINC01560Q8TB33 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LINC01560Q8TB33 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.64■□□□□ 0.89
LINC01560Q8TB33 AC010997.5-201ENST00000609182 354 ntBASIC20.64■□□□□ 0.89
LINC01560Q8TB33 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.64■□□□□ 0.89
LINC01560Q8TB33 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LINC01560Q8TB33 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LINC01560Q8TB33 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LINC01560Q8TB33 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LINC01560Q8TB33 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
LINC01560Q8TB33 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LINC01560Q8TB33 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LINC01560Q8TB33 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
LINC01560Q8TB33 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LINC01560Q8TB33 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.62■□□□□ 0.89
LINC01560Q8TB33 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.62■□□□□ 0.89
LINC01560Q8TB33 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LINC01560Q8TB33 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 MTDHP2-201ENST00000601468 714 ntBASIC20.61■□□□□ 0.89
LINC01560Q8TB33 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 AC011551.1-201ENST00000614101 683 ntBASIC20.61■□□□□ 0.89
LINC01560Q8TB33 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LINC01560Q8TB33 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 AC131281.2-201ENST00000520478 145 ntBASIC20.6■□□□□ 0.89
LINC01560Q8TB33 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LINC01560Q8TB33 MIR935-201ENST00000401179 91 ntBASIC20.59■□□□□ 0.89
LINC01560Q8TB33 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.59■□□□□ 0.89
LINC01560Q8TB33 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms