Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 GOLGA2-202ENST00000450617 1439 ntTSL 515.19■□□□□ 0.021e-6■□□□□ 10.6
DDX42Q86XP3 GOLGA2-206ENST00000468488 531 ntTSL 313.15□□□□□ -0.31e-6■□□□□ 10.6
DDX42Q86XP3 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.441e-6■□□□□ 10.6
DDX42Q86XP3 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.541e-6■□□□□ 10.6
DDX42Q86XP3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.8■□□□□ 0.922e-6■□□□□ 10.6
DDX42Q86XP3 PTBP1-210ENST00000586944 4661 ntTSL 218.56■□□□□ 0.562e-6■□□□□ 10.6
DDX42Q86XP3 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.292e-6■□□□□ 10.6
DDX42Q86XP3 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.85■□□□□ 0.292e-6■□□□□ 10.6
DDX42Q86XP3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.282e-6■□□□□ 10.6
DDX42Q86XP3 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.78■□□□□ 0.122e-6■□□□□ 10.6
DDX42Q86XP3 PTBP1-213ENST00000587191 357 ntTSL 512.21□□□□□ -0.452e-6■□□□□ 10.6
DDX42Q86XP3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.73■■□□□ 1.078e-9■□□□□ 10.6
DDX42Q86XP3 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.998e-9■□□□□ 10.6
DDX42Q86XP3 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.69■□□□□ 0.748e-9■□□□□ 10.6
DDX42Q86XP3 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.13■□□□□ 0.658e-9■□□□□ 10.6
DDX42Q86XP3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.58e-9■□□□□ 10.6
DDX42Q86XP3 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.86■□□□□ 0.458e-9■□□□□ 10.6
DDX42Q86XP3 SCARB1-205ENST00000538291 5527 ntTSL 517.37■□□□□ 0.378e-9■□□□□ 10.6
DDX42Q86XP3 SCARB1-209ENST00000545305 851 ntTSL 214.21□□□□□ -0.138e-9■□□□□ 10.6
DDX42Q86XP3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.51■■□□□ 1.517e-12■□□□□ 10.5
DDX42Q86XP3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.327e-12■□□□□ 10.5
DDX42Q86XP3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.757e-12■□□□□ 10.5
DDX42Q86XP3 HNRNPD-206ENST00000508119 735 ntTSL 29.47□□□□□ -0.897e-12■□□□□ 10.5
DDX42Q86XP3 HNRNPD-211ENST00000514671 1089 ntTSL 59.16□□□□□ -0.947e-12■□□□□ 10.5
DDX42Q86XP3 HNRNPD-210ENST00000514325 4597 ntTSL 1 (best)4.88□□□□□ -1.637e-12■□□□□ 10.5
DDX42Q86XP3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.57■□□□□ 0.883e-6■□□□□ 10.5
DDX42Q86XP3 DYRK1A-207ENST00000462274 1189 ntTSL 1 (best)26.98■■□□□ 1.912e-8■□□□□ 10.4
DDX42Q86XP3 DYRK1A-209ENST00000608928 483 ntTSL 522.92■■□□□ 1.262e-8■□□□□ 10.4
DDX42Q86XP3 AC005726.2-201ENST00000481916 2091 ntTSL 1 (best)22.75■■□□□ 1.236e-6■□□□□ 10.4
DDX42Q86XP3 HMGN2-205ENST00000466194 952 ntTSL 219.09■□□□□ 0.659e-7■□□□□ 10.4
DDX42Q86XP3 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.076e-6■□□□□ 10.4
DDX42Q86XP3 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.48□□□□□ -0.096e-6■□□□□ 10.4
DDX42Q86XP3 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.149e-7■□□□□ 10.4
DDX42Q86XP3 ALOX12-AS1-205ENST00000572385 576 ntTSL 413.99□□□□□ -0.179e-7■□□□□ 10.4
DDX42Q86XP3 ASNS-215ENST00000462436 698 ntTSL 213.36□□□□□ -0.279e-7■□□□□ 10.4
DDX42Q86XP3 AC005726.2-202ENST00000531839 1033 ntAPPRIS P5 TSL 212.05□□□□□ -0.486e-6■□□□□ 10.4
DDX42Q86XP3 ALOX12-AS1-203ENST00000570562 567 ntTSL 3 BASIC12.02□□□□□ -0.499e-7■□□□□ 10.4
DDX42Q86XP3 ALOX12-AS1-209ENST00000575889 439 ntTSL 3 BASIC11.55□□□□□ -0.569e-7■□□□□ 10.4
DDX42Q86XP3 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC8.05□□□□□ -1.129e-7■□□□□ 10.4
DDX42Q86XP3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.322e-9■□□□□ 10.3
DDX42Q86XP3 ICAM5-203ENST00000586480 2599 ntTSL 1 (best)21.38■■□□□ 1.012e-9■□□□□ 10.3
DDX42Q86XP3 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.381e-6■□□□□ 10.3
DDX42Q86XP3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.483e-6■□□□□ 10.3
DDX42Q86XP3 PTBP1-217ENST00000592113 1548 ntTSL 523.43■■□□□ 1.343e-6■□□□□ 10.3
DDX42Q86XP3 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.343e-6■□□□□ 10.3
DDX42Q86XP3 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC12.71□□□□□ -0.373e-6■□□□□ 10.3
DDX42Q86XP3 SLC6A6-207ENST00000618278 6401 ntTSL 511.77□□□□□ -0.533e-6■□□□□ 10.3
DDX42Q86XP3 SLC6A6-201ENST00000452151 284 ntTSL 57.49□□□□□ -1.213e-6■□□□□ 10.3
DDX42Q86XP3 SQSTM1-215ENST00000514093 842 ntTSL 521.63■■□□□ 1.052e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.692e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-204ENST00000453046 572 ntTSL 419.02■□□□□ 0.642e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-209ENST00000504627 602 ntTSL 519.02■□□□□ 0.642e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-212ENST00000508284 578 ntTSL 419.02■□□□□ 0.642e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.16■□□□□ 0.342e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-205ENST00000464493 532 ntTSL 415.23■□□□□ 0.032e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-207ENST00000481335 562 ntTSL 412.92□□□□□ -0.342e-11■□□□□ 10.2
DDX42Q86XP3 SQSTM1-203ENST00000422245 628 ntTSL 412.29□□□□□ -0.442e-11■□□□□ 10.2
DDX42Q86XP3 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.246e-7■□□□□ 10.1
DDX42Q86XP3 SRRT-213ENST00000611405 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.366e-7■□□□□ 10.1
DDX42Q86XP3 SRRT-215ENST00000614484 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.416e-7■□□□□ 10.1
DDX42Q86XP3 SRRT-216ENST00000618262 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.416e-7■□□□□ 10.1
DDX42Q86XP3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.712e-8■□□□□ 10.1
DDX42Q86XP3 TIMM44-208ENST00000598968 797 ntTSL 323.81■■□□□ 1.42e-8■□□□□ 10.1
DDX42Q86XP3 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.42e-8■□□□□ 10.1
DDX42Q86XP3 TIMM44-203ENST00000595831 1797 ntTSL 516.15■□□□□ 0.182e-8■□□□□ 10.1
DDX42Q86XP3 HNRNPH3-210ENST00000490442 1521 ntTSL 214.86□□□□□ -0.032e-8■□□□□ 10.1
DDX42Q86XP3 TIMM44-204ENST00000595876 1206 ntTSL 1 (best)14.69□□□□□ -0.062e-8■□□□□ 10.1
DDX42Q86XP3 TIMM44-202ENST00000595565 868 ntTSL 314.5□□□□□ -0.092e-8■□□□□ 10.1
DDX42Q86XP3 TIMM44-209ENST00000599650 921 ntTSL 214.18□□□□□ -0.142e-8■□□□□ 10.1
DDX42Q86XP3 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.322e-9■□□□□ 10.1
DDX42Q86XP3 GTPBP2-206ENST00000452781 681 ntTSL 521.51■■□□□ 1.031e-12■□□□□ 10.1
DDX42Q86XP3 ATXN2L-218ENST00000565971 3264 ntTSL 1 (best)16.45■□□□□ 0.223e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.163e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.153e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-211ENST00000563314 4574 ntTSL 515.73■□□□□ 0.113e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.033e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.073e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.073e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.133e-6■□□□□ 10.1
DDX42Q86XP3 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.23e-6■□□□□ 10.1
DDX42Q86XP3 RPL10-217ENST00000492572 1656 ntTSL 517.94■□□□□ 0.467e-14■□□□□ 10
DDX42Q86XP3 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.26□□□□□ -0.137e-14■□□□□ 10
DDX42Q86XP3 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.167e-14■□□□□ 10
DDX42Q86XP3 RPL10-210ENST00000458500 585 ntTSL 1 (best)14.03□□□□□ -0.167e-14■□□□□ 10
DDX42Q86XP3 RPL10-218ENST00000618723 2210 ntTSL 5 BASIC13.79□□□□□ -0.27e-14■□□□□ 10
DDX42Q86XP3 RPL10-215ENST00000489200 1519 ntTSL 213.24□□□□□ -0.297e-14■□□□□ 10
DDX42Q86XP3 RPL10-204ENST00000424325 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.37e-14■□□□□ 10
DDX42Q86XP3 RPL10-214ENST00000485196 839 ntTSL 212.61□□□□□ -0.397e-14■□□□□ 10
DDX42Q86XP3 RPL10-207ENST00000436473 657 ntTSL 212.3□□□□□ -0.447e-14■□□□□ 10
DDX42Q86XP3 RPL10-201ENST00000344746 2278 ntAPPRIS P1 TSL 1 (best)11.98□□□□□ -0.497e-14■□□□□ 10
DDX42Q86XP3 RPL10-213ENST00000482732 1731 ntTSL 1 (best)11.76□□□□□ -0.537e-14■□□□□ 10
DDX42Q86XP3 RPL10-211ENST00000467168 802 ntTSL 211.22□□□□□ -0.617e-14■□□□□ 10
DDX42Q86XP3 RPL10-216ENST00000491035 1369 ntTSL 511.21□□□□□ -0.617e-14■□□□□ 10
DDX42Q86XP3 RPL10-209ENST00000451365 713 ntTSL 1 (best)11.02□□□□□ -0.657e-14■□□□□ 10
DDX42Q86XP3 YTHDF2-206ENST00000478283 2594 ntTSL 1 (best)19.98■□□□□ 0.791e-9■□□□□ 10
DDX42Q86XP3 YTHDF2-203ENST00000474884 864 ntTSL 518.84■□□□□ 0.611e-9■□□□□ 10
DDX42Q86XP3 YTHDF2-207ENST00000496288 879 ntTSL 218.47■□□□□ 0.551e-9■□□□□ 10
DDX42Q86XP3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.471e-9■□□□□ 10
DDX42Q86XP3 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.131e-9■□□□□ 10
DDX42Q86XP3 YTHDF2-208ENST00000541996 2719 ntTSL 2 BASIC13.8□□□□□ -0.21e-9■□□□□ 10
Retrieved 100 of 2,477 protein–RNA pairs in 60.8 ms