Protein–RNA interactions for Protein: Q7RTT3

SSX9, Protein SSX9, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX9Q7RTT3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSX9Q7RTT3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSX9Q7RTT3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 AC138932.3-201ENST00000567634 1902 ntBASIC19.41■□□□□ 0.7
SSX9Q7RTT3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.41■□□□□ 0.7
SSX9Q7RTT3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SSX9Q7RTT3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX9Q7RTT3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.39■□□□□ 0.69
SSX9Q7RTT3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX9Q7RTT3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX9Q7RTT3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX9Q7RTT3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX9Q7RTT3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX9Q7RTT3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX9Q7RTT3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX9Q7RTT3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
SSX9Q7RTT3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SSX9Q7RTT3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.38■□□□□ 0.69
SSX9Q7RTT3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.38■□□□□ 0.69
SSX9Q7RTT3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX9Q7RTT3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.37■□□□□ 0.69
SSX9Q7RTT3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX9Q7RTT3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 MIR7108-201ENST00000614319 87 ntBASIC19.35■□□□□ 0.69
SSX9Q7RTT3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX9Q7RTT3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.34■□□□□ 0.69
SSX9Q7RTT3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX9Q7RTT3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX9Q7RTT3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SSX9Q7RTT3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX9Q7RTT3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX9Q7RTT3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX9Q7RTT3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX9Q7RTT3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms