Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.87■■■□□ 2.69
COL3A1P02461 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
COL3A1P02461 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
COL3A1P02461 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL3A1P02461 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
COL3A1P02461 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.86■■■□□ 2.69
COL3A1P02461 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL3A1P02461 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
COL3A1P02461 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL3A1P02461 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
COL3A1P02461 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
COL3A1P02461 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL3A1P02461 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL3A1P02461 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL3A1P02461 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC31.83■■■□□ 2.69
COL3A1P02461 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL3A1P02461 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.82■■■□□ 2.69
COL3A1P02461 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.82■■■□□ 2.68
COL3A1P02461 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL3A1P02461 AC009299.2-201ENST00000482477 511 ntBASIC31.82■■■□□ 2.68
COL3A1P02461 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL3A1P02461 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL3A1P02461 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL3A1P02461 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.8■■■□□ 2.68
COL3A1P02461 AL035685.1-201ENST00000636663 812 ntBASIC31.8■■■□□ 2.68
COL3A1P02461 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC31.8■■■□□ 2.68
COL3A1P02461 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC31.79■■■□□ 2.68
COL3A1P02461 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31.79■■■□□ 2.68
COL3A1P02461 YBX1P4-201ENST00000392794 808 ntBASIC31.78■■■□□ 2.68
COL3A1P02461 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL3A1P02461 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL3A1P02461 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.78■■■□□ 2.68
COL3A1P02461 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL3A1P02461 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC31.78■■■□□ 2.68
COL3A1P02461 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL3A1P02461 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL3A1P02461 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL3A1P02461 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
COL3A1P02461 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
COL3A1P02461 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL3A1P02461 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC31.77■■■□□ 2.68
COL3A1P02461 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC31.77■■■□□ 2.68
COL3A1P02461 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL3A1P02461 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.77■■■□□ 2.68
COL3A1P02461 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
COL3A1P02461 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
COL3A1P02461 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
COL3A1P02461 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
COL3A1P02461 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
COL3A1P02461 AC097639.1-201ENST00000565519 1891 ntBASIC31.76■■■□□ 2.67
COL3A1P02461 AC022616.5-201ENST00000518796 181 ntBASIC31.76■■■□□ 2.67
COL3A1P02461 PRTG-204ENST00000561292 833 ntTSL 3 BASIC31.76■■■□□ 2.67
COL3A1P02461 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
COL3A1P02461 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC31.76■■■□□ 2.67
COL3A1P02461 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
COL3A1P02461 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
COL3A1P02461 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC31.75■■■□□ 2.67
COL3A1P02461 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL3A1P02461 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.75■■■□□ 2.67
COL3A1P02461 AL031848.2-201ENST00000607670 837 ntBASIC31.75■■■□□ 2.67
COL3A1P02461 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL3A1P02461 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
COL3A1P02461 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL3A1P02461 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL3A1P02461 AC145676.1-201ENST00000514988 2004 ntBASIC31.73■■■□□ 2.67
COL3A1P02461 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
COL3A1P02461 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
COL3A1P02461 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL3A1P02461 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL3A1P02461 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
COL3A1P02461 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC31.71■■■□□ 2.67
COL3A1P02461 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.71■■■□□ 2.67
COL3A1P02461 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
COL3A1P02461 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC31.7■■■□□ 2.67
COL3A1P02461 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC31.7■■■□□ 2.66
COL3A1P02461 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
COL3A1P02461 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL3A1P02461 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
COL3A1P02461 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.69■■■□□ 2.66
COL3A1P02461 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC31.69■■■□□ 2.66
COL3A1P02461 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL3A1P02461 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
COL3A1P02461 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL3A1P02461 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
COL3A1P02461 FOXO3B-201ENST00000395675 1928 ntBASIC31.68■■■□□ 2.66
COL3A1P02461 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
COL3A1P02461 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC31.67■■■□□ 2.66
COL3A1P02461 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL3A1P02461 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.67■■■□□ 2.66
COL3A1P02461 AC120024.1-201ENST00000562672 995 ntBASIC31.67■■■□□ 2.66
COL3A1P02461 TK2-216ENST00000564917 1156 ntTSL 3 BASIC31.67■■■□□ 2.66
COL3A1P02461 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL3A1P02461 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL3A1P02461 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
COL3A1P02461 AL592295.1-201ENST00000400984 884 ntBASIC31.66■■■□□ 2.66
COL3A1P02461 TRIR-205ENST00000592273 783 ntTSL 3 BASIC31.66■■■□□ 2.66
COL3A1P02461 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.66■■■□□ 2.66
COL3A1P02461 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
COL3A1P02461 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL3A1P02461 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms