Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH11P55287 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH11P55287 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH11P55287 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH11P55287 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH11P55287 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CDH11P55287 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH11P55287 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH11P55287 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 AP002414.1-201ENST00000391405 1147 ntBASIC15.16■□□□□ 0.02
CDH11P55287 AL020989.1-201ENST00000422979 469 ntBASIC15.16■□□□□ 0.02
CDH11P55287 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH11P55287 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH11P55287 AC105339.3-201ENST00000560043 636 ntBASIC15.16■□□□□ 0.02
CDH11P55287 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH11P55287 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH11P55287 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CDH11P55287 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH11P55287 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH11P55287 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH11P55287 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.15■□□□□ 0.02
CDH11P55287 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CDH11P55287 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.15■□□□□ 0.02
CDH11P55287 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 AL596087.1-201ENST00000400979 1969 ntBASIC15.15■□□□□ 0.02
CDH11P55287 SPDYE21P-201ENST00000413323 827 ntBASIC15.15■□□□□ 0.02
CDH11P55287 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.15■□□□□ 0.02
CDH11P55287 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.15■□□□□ 0.02
CDH11P55287 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.15■□□□□ 0.02
CDH11P55287 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 AC012640.2-201ENST00000561606 901 ntBASIC15.15■□□□□ 0.02
CDH11P55287 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.15■□□□□ 0.02
CDH11P55287 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.15■□□□□ 0.02
CDH11P55287 AC073592.4-201ENST00000623827 446 ntBASIC15.15■□□□□ 0.02
CDH11P55287 AC117500.6-201ENST00000624871 588 ntBASIC15.15■□□□□ 0.02
CDH11P55287 AL139011.1-202ENST00000642063 584 ntBASIC15.15■□□□□ 0.02
CDH11P55287 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 AC104109.2-201ENST00000602919 1418 ntBASIC15.15■□□□□ 0.02
CDH11P55287 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CDH11P55287 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
CDH11P55287 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH11P55287 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH11P55287 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH11P55287 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CDH11P55287 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH11P55287 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH11P55287 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH11P55287 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms