Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 SLC25A6P2-201ENST00000497974 877 ntBASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.3■□□□□ 0.04
POLR2J3Q9H1A7 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 AL603832.2-201ENST00000566195 2125 ntBASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 ELK2BP-201ENST00000415014 1224 ntBASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 AC107918.2-201ENST00000530817 355 ntBASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 PRELID1P1-202ENST00000567272 903 ntBASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 AC006449.6-201ENST00000612330 2296 ntBASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 GPAA1P2-202ENST00000606848 1787 ntBASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
POLR2J3Q9H1A7 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 AC006504.4-201ENST00000592118 1568 ntBASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
POLR2J3Q9H1A7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms