Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
RFX3P48380 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 CRYGEP-201ENST00000412192 528 ntBASIC15.59■□□□□ 0.09
RFX3P48380 AL590627.1-203ENST00000421194 1026 ntBASIC15.59■□□□□ 0.09
RFX3P48380 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 FDX1P1-201ENST00000449115 551 ntBASIC15.59■□□□□ 0.09
RFX3P48380 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 REXO1L3P-201ENST00000622202 1288 ntBASIC15.59■□□□□ 0.09
RFX3P48380 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.59■□□□□ 0.09
RFX3P48380 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.59■□□□□ 0.09
RFX3P48380 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
RFX3P48380 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX3P48380 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.59■□□□□ 0.09
RFX3P48380 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.58■□□□□ 0.09
RFX3P48380 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.58■□□□□ 0.09
RFX3P48380 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
RFX3P48380 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.58■□□□□ 0.09
RFX3P48380 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
RFX3P48380 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
RFX3P48380 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 AC131009.4-201ENST00000624048 1740 ntBASIC15.58■□□□□ 0.08
RFX3P48380 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 PMS2P1-201ENST00000431037 1228 ntBASIC15.58■□□□□ 0.08
RFX3P48380 AC009947.1-201ENST00000444350 727 ntBASIC15.58■□□□□ 0.08
RFX3P48380 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 AC107918.2-201ENST00000530817 355 ntBASIC15.58■□□□□ 0.08
RFX3P48380 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.58■□□□□ 0.08
RFX3P48380 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.58■□□□□ 0.08
RFX3P48380 MPDU1-223ENST00000582151 728 ntBASIC15.58■□□□□ 0.08
RFX3P48380 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.58■□□□□ 0.08
RFX3P48380 AC010654.1-201ENST00000615722 808 ntBASIC15.58■□□□□ 0.08
RFX3P48380 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
RFX3P48380 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 IL9RP2-201ENST00000423948 1312 ntBASIC15.58■□□□□ 0.08
RFX3P48380 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.58■□□□□ 0.08
RFX3P48380 HLA-A-202ENST00000376806 1854 ntBASIC15.58■□□□□ 0.08
RFX3P48380 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
RFX3P48380 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.58■□□□□ 0.08
RFX3P48380 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.58■□□□□ 0.08
RFX3P48380 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
RFX3P48380 AC006277.1-201ENST00000624348 1610 ntBASIC15.57■□□□□ 0.08
RFX3P48380 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.57■□□□□ 0.08
RFX3P48380 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms