Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.1■□□□□ 0.49
TRAIPQ9BWF2 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AC125807.1-201ENST00000483097 614 ntBASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 AC092053.1-201ENST00000605787 1936 ntBASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAIPQ9BWF2 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
TRAIPQ9BWF2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAIPQ9BWF2 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
TRAIPQ9BWF2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.08■□□□□ 0.49
TRAIPQ9BWF2 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRAIPQ9BWF2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAIPQ9BWF2 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAIPQ9BWF2 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 MIR943-201ENST00000401286 94 ntBASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAIPQ9BWF2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 BASP1P1-201ENST00000430708 665 ntBASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms