Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.68■□□□□ 0.58
CCNA1P78396 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNA1P78396 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.68■□□□□ 0.58
CCNA1P78396 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCNA1P78396 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCNA1P78396 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.68■□□□□ 0.58
CCNA1P78396 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCNA1P78396 GPAA1P2-202ENST00000606848 1787 ntBASIC18.68■□□□□ 0.58
CCNA1P78396 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
CCNA1P78396 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CCNA1P78396 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.67■□□□□ 0.58
CCNA1P78396 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.67■□□□□ 0.58
CCNA1P78396 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.67■□□□□ 0.58
CCNA1P78396 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.67■□□□□ 0.58
CCNA1P78396 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.67■□□□□ 0.58
CCNA1P78396 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.67■□□□□ 0.58
CCNA1P78396 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCNA1P78396 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
CCNA1P78396 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.66■□□□□ 0.58
CCNA1P78396 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCNA1P78396 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.66■□□□□ 0.58
CCNA1P78396 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCNA1P78396 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.66■□□□□ 0.58
CCNA1P78396 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 MYCLP2-201ENST00000449268 967 ntBASIC18.66■□□□□ 0.58
CCNA1P78396 ACA64.2-201ENST00000459014 129 ntBASIC18.66■□□□□ 0.58
CCNA1P78396 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.66■□□□□ 0.58
CCNA1P78396 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.66■□□□□ 0.58
CCNA1P78396 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
CCNA1P78396 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.66■□□□□ 0.58
CCNA1P78396 MIR6805-201ENST00000615055 62 ntBASIC18.66■□□□□ 0.58
CCNA1P78396 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCNA1P78396 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 AC007613.1-201ENST00000572811 2597 ntBASIC18.66■□□□□ 0.58
CCNA1P78396 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCNA1P78396 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCNA1P78396 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCNA1P78396 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCNA1P78396 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCNA1P78396 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCNA1P78396 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCNA1P78396 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
CCNA1P78396 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
CCNA1P78396 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCNA1P78396 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.65■□□□□ 0.58
CCNA1P78396 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCNA1P78396 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCNA1P78396 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCNA1P78396 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCNA1P78396 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms