Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXA1P55317 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.03■□□□□ 0.16
FOXA1P55317 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.03■□□□□ 0.16
FOXA1P55317 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.03■□□□□ 0.16
FOXA1P55317 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.03■□□□□ 0.16
FOXA1P55317 AL356488.2-201ENST00000602755 427 ntBASIC16.03■□□□□ 0.16
FOXA1P55317 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXA1P55317 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
FOXA1P55317 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
FOXA1P55317 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
FOXA1P55317 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
FOXA1P55317 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
FOXA1P55317 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXA1P55317 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
FOXA1P55317 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
FOXA1P55317 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.02■□□□□ 0.16
FOXA1P55317 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
FOXA1P55317 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FOXA1P55317 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.02■□□□□ 0.16
FOXA1P55317 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
FOXA1P55317 AC018712.1-201ENST00000455767 687 ntBASIC16.02■□□□□ 0.16
FOXA1P55317 EMBP1-201ENST00000458200 901 ntBASIC16.02■□□□□ 0.16
FOXA1P55317 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.02■□□□□ 0.16
FOXA1P55317 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
FOXA1P55317 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.02■□□□□ 0.16
FOXA1P55317 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
FOXA1P55317 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
FOXA1P55317 AC148477.8-201ENST00000624298 468 ntBASIC16.02■□□□□ 0.16
FOXA1P55317 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.02■□□□□ 0.15
FOXA1P55317 CDC14C-201ENST00000428251 1719 ntBASIC16.02■□□□□ 0.15
FOXA1P55317 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.02■□□□□ 0.15
FOXA1P55317 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA1P55317 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
FOXA1P55317 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.02■□□□□ 0.15
FOXA1P55317 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 LINC02447-202ENST00000501888 2146 ntBASIC16.01■□□□□ 0.15
FOXA1P55317 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.01■□□□□ 0.15
FOXA1P55317 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA1P55317 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
FOXA1P55317 FAM197Y8-203ENST00000450145 560 ntBASIC16.01■□□□□ 0.15
FOXA1P55317 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.01■□□□□ 0.15
FOXA1P55317 AC105339.3-201ENST00000560043 636 ntBASIC16.01■□□□□ 0.15
FOXA1P55317 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 ACTL9-202ENST00000612068 1252 ntBASIC16.01■□□□□ 0.15
FOXA1P55317 AC004790.2-201ENST00000623588 572 ntBASIC16.01■□□□□ 0.15
FOXA1P55317 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA1P55317 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.01■□□□□ 0.15
FOXA1P55317 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA1P55317 AC112504.1-201ENST00000623415 1841 ntBASIC16.01■□□□□ 0.15
FOXA1P55317 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXA1P55317 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16■□□□□ 0.15
FOXA1P55317 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
FOXA1P55317 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16■□□□□ 0.15
FOXA1P55317 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16■□□□□ 0.15
FOXA1P55317 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
FOXA1P55317 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16■□□□□ 0.15
FOXA1P55317 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 PRAL-201ENST00000624952 3286 ntBASIC16■□□□□ 0.15
FOXA1P55317 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 AC108073.2-201ENST00000464002 357 ntBASIC16■□□□□ 0.15
FOXA1P55317 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA1P55317 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16■□□□□ 0.15
FOXA1P55317 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16■□□□□ 0.15
FOXA1P55317 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16■□□□□ 0.15
FOXA1P55317 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms