Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.23■□□□□ 0.03
CDH11P55287 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CDH11P55287 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CDH11P55287 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
CDH11P55287 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CDH11P55287 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.23■□□□□ 0.03
CDH11P55287 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CDH11P55287 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.23■□□□□ 0.03
CDH11P55287 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH11P55287 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH11P55287 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.22■□□□□ 0.03
CDH11P55287 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH11P55287 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 DUX4L17-201ENST00000557360 1267 ntBASIC15.22■□□□□ 0.03
CDH11P55287 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.22■□□□□ 0.03
CDH11P55287 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 NKAPP1-205ENST00000585790 367 ntBASIC15.22■□□□□ 0.03
CDH11P55287 AC025062.2-201ENST00000605477 670 ntBASIC15.22■□□□□ 0.03
CDH11P55287 AP000867.4-201ENST00000641616 219 ntBASIC15.22■□□□□ 0.03
CDH11P55287 LINC00554-201ENST00000564841 3011 ntBASIC15.22■□□□□ 0.03
CDH11P55287 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.22■□□□□ 0.03
CDH11P55287 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CDH11P55287 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CDH11P55287 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.22■□□□□ 0.03
CDH11P55287 AC024909.3-201ENST00000611513 2257 ntBASIC15.22■□□□□ 0.03
CDH11P55287 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CDH11P55287 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH11P55287 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH11P55287 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CDH11P55287 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH11P55287 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CDH11P55287 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
CDH11P55287 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH11P55287 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH11P55287 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH11P55287 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH11P55287 ACTG1P4-201ENST00000425123 1122 ntBASIC15.21■□□□□ 0.03
CDH11P55287 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH11P55287 BX005266.1-201ENST00000473402 457 ntBASIC15.21■□□□□ 0.03
CDH11P55287 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.21■□□□□ 0.03
CDH11P55287 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
CDH11P55287 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH11P55287 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 MTDHP4-201ENST00000600287 670 ntBASIC15.21■□□□□ 0.03
CDH11P55287 AC023511.2-201ENST00000618803 211 ntBASIC15.21■□□□□ 0.03
CDH11P55287 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH11P55287 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH11P55287 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
CDH11P55287 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.21■□□□□ 0.02
CDH11P55287 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH11P55287 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms