Protein–RNA interactions for Protein: Q9UBN7

HDAC6, Histone deacetylase 6, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6Q9UBN7 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 MIR943-201ENST00000401286 94 ntBASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 AJ011932.1-201ENST00000621707 465 ntBASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 WASH6P-202ENST00000359512 1437 ntBASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 AC008677.1-201ENST00000519230 1561 ntBASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 AC092171.3-201ENST00000610122 2651 ntBASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDAC6Q9UBN7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.71■□□□□ 0.58
HDAC6Q9UBN7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 TOP3BP1-201ENST00000420768 1380 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 RNF216P1-203ENST00000404404 2427 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 RNU1-129P-201ENST00000384064 167 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 SLC25A1P3-201ENST00000395415 828 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 SPDYE14P-201ENST00000442619 822 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 INGX-202ENST00000489074 768 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 U1.21-201ENST00000580816 167 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 AL031055.1-201ENST00000606362 631 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 AC084121.4-201ENST00000641598 221 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 AF228730.8-201ENST00000642140 221 ntBASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HDAC6Q9UBN7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDAC6Q9UBN7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms