Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 RNU1-129P-201ENST00000384064 167 ntBASIC15.76■□□□□ 0.11
PROM1O43490 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.76■□□□□ 0.11
PROM1O43490 MED15P5-201ENST00000423150 992 ntBASIC15.76■□□□□ 0.11
PROM1O43490 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 KRT18P3-201ENST00000451602 1288 ntBASIC15.76■□□□□ 0.11
PROM1O43490 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PROM1O43490 RNA5SP416-201ENST00000516838 111 ntBASIC15.76■□□□□ 0.11
PROM1O43490 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
PROM1O43490 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.76■□□□□ 0.11
PROM1O43490 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.76■□□□□ 0.11
PROM1O43490 KRT19P2-202ENST00000557173 1012 ntBASIC15.76■□□□□ 0.11
PROM1O43490 U1.21-201ENST00000580816 167 ntBASIC15.76■□□□□ 0.11
PROM1O43490 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.76■□□□□ 0.11
PROM1O43490 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.76■□□□□ 0.11
PROM1O43490 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
PROM1O43490 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 GGT4P-201ENST00000623672 1708 ntBASIC15.76■□□□□ 0.11
PROM1O43490 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.76■□□□□ 0.11
PROM1O43490 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.76■□□□□ 0.11
PROM1O43490 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PROM1O43490 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.75■□□□□ 0.11
PROM1O43490 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
PROM1O43490 ALOX12P2-203ENST00000570921 1945 ntBASIC15.75■□□□□ 0.11
PROM1O43490 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
PROM1O43490 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.75■□□□□ 0.11
PROM1O43490 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.75■□□□□ 0.11
PROM1O43490 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.75■□□□□ 0.11
PROM1O43490 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.75■□□□□ 0.11
PROM1O43490 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.11
PROM1O43490 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.75■□□□□ 0.11
PROM1O43490 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PROM1O43490 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.75■□□□□ 0.11
PROM1O43490 MIR3909-201ENST00000579518 119 ntBASIC15.75■□□□□ 0.11
PROM1O43490 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.75■□□□□ 0.11
PROM1O43490 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 GGT3P-204ENST00000453783 1664 ntBASIC15.75■□□□□ 0.11
PROM1O43490 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.75■□□□□ 0.11
PROM1O43490 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PROM1O43490 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PROM1O43490 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.74■□□□□ 0.11
PROM1O43490 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
PROM1O43490 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.74■□□□□ 0.11
PROM1O43490 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.74■□□□□ 0.11
PROM1O43490 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 PMS2P4-201ENST00000412466 1052 ntBASIC15.74■□□□□ 0.11
PROM1O43490 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.74■□□□□ 0.11
PROM1O43490 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 POLD2P1-201ENST00000511220 997 ntBASIC15.74■□□□□ 0.11
PROM1O43490 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.74■□□□□ 0.11
PROM1O43490 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 PCDHA1-201ENST00000378133 2726 ntBASIC15.74■□□□□ 0.11
PROM1O43490 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.74■□□□□ 0.11
PROM1O43490 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.74■□□□□ 0.11
PROM1O43490 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.74■□□□□ 0.11
PROM1O43490 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PROM1O43490 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms