Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 MIR4492-201ENST00000581627 80 ntBASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 CLEC4GP1-201ENST00000596555 870 ntBASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 LINC01711-201ENST00000598340 967 ntBASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 GGT4P-201ENST00000623672 1708 ntBASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLHC1Q8NHS4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 AC131009.4-201ENST00000624048 1740 ntBASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 LAGE3P1-201ENST00000425356 484 ntBASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 RPS2P1-201ENST00000434010 821 ntBASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 AL805961.1-202ENST00000641562 540 ntBASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.97■□□□□ 0.15
CLHC1Q8NHS4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms