Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.24■□□□□ 0.19
PCNAP12004 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.24■□□□□ 0.19
PCNAP12004 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.24■□□□□ 0.19
PCNAP12004 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
PCNAP12004 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.24■□□□□ 0.19
PCNAP12004 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PCNAP12004 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.24■□□□□ 0.19
PCNAP12004 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.24■□□□□ 0.19
PCNAP12004 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCNAP12004 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 LINC00895-201ENST00000629028 1637 ntBASIC16.23■□□□□ 0.19
PCNAP12004 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 AC092910.1-201ENST00000482027 1129 ntBASIC16.23■□□□□ 0.19
PCNAP12004 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.23■□□□□ 0.19
PCNAP12004 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.23■□□□□ 0.19
PCNAP12004 AL773604.1-201ENST00000617417 272 ntBASIC16.23■□□□□ 0.19
PCNAP12004 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCNAP12004 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
PCNAP12004 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PCNAP12004 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 AL596257.1-201ENST00000641463 2694 ntBASIC16.22■□□□□ 0.19
PCNAP12004 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PCNAP12004 AP002469.2-201ENST00000531724 424 ntBASIC16.22■□□□□ 0.19
PCNAP12004 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PCNAP12004 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.22■□□□□ 0.19
PCNAP12004 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.22■□□□□ 0.19
PCNAP12004 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 FAM215A-202ENST00000632077 792 ntBASIC16.22■□□□□ 0.19
PCNAP12004 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms