Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 IGHGP-201ENST00000390555 1178 ntBASIC12.54□□□□□ -0.4
FOXA3P55318 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 IRX5-204ENST00000560154 879 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC12.54□□□□□ -0.4
FOXA3P55318 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 AL136038.4-201ENST00000603606 1261 ntBASIC12.54□□□□□ -0.4
FOXA3P55318 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
FOXA3P55318 FAM45BP-202ENST00000592932 1624 ntBASIC12.54□□□□□ -0.4
FOXA3P55318 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 AL353692.3-201ENST00000407031 1396 ntBASIC12.54□□□□□ -0.4
FOXA3P55318 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 SNX18-202ENST00000343017 3140 ntBASIC12.53□□□□□ -0.4
FOXA3P55318 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
FOXA3P55318 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
FOXA3P55318 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
FOXA3P55318 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
FOXA3P55318 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
FOXA3P55318 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 AC007967.3-201ENST00000434308 558 ntBASIC12.53□□□□□ -0.4
FOXA3P55318 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC12.53□□□□□ -0.4
FOXA3P55318 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC12.53□□□□□ -0.4
FOXA3P55318 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA3P55318 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC12.53□□□□□ -0.4
FOXA3P55318 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
FOXA3P55318 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA3P55318 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms