Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A5P29400 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A5P29400 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A5P29400 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.73
COL4A5P29400 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A5P29400 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.58■□□□□ 0.73
COL4A5P29400 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.58■□□□□ 0.73
COL4A5P29400 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A5P29400 AC067852.2-201ENST00000590513 2313 ntBASIC19.58■□□□□ 0.73
COL4A5P29400 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
COL4A5P29400 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A5P29400 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A5P29400 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A5P29400 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.58■□□□□ 0.72
COL4A5P29400 AL390961.4-201ENST00000623958 2535 ntBASIC19.58■□□□□ 0.72
COL4A5P29400 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A5P29400 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A5P29400 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A5P29400 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.58■□□□□ 0.72
COL4A5P29400 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A5P29400 RPL13P2-201ENST00000440687 659 ntBASIC19.58■□□□□ 0.72
COL4A5P29400 EEF1DP4-201ENST00000446006 880 ntBASIC19.58■□□□□ 0.72
COL4A5P29400 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A5P29400 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A5P29400 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A5P29400 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
COL4A5P29400 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
COL4A5P29400 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A5P29400 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL4A5P29400 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A5P29400 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL4A5P29400 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A5P29400 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A5P29400 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL4A5P29400 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL4A5P29400 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL4A5P29400 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL4A5P29400 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A5P29400 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A5P29400 AL139099.5-201ENST00000635274 300 ntBASIC19.57■□□□□ 0.72
COL4A5P29400 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A5P29400 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A5P29400 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A5P29400 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A5P29400 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A5P29400 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A5P29400 AC009542.2-202ENST00000619004 1067 ntBASIC19.56■□□□□ 0.72
COL4A5P29400 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.56■□□□□ 0.72
COL4A5P29400 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 MSTO2P-201ENST00000314835 1709 ntBASIC19.56■□□□□ 0.72
COL4A5P29400 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A5P29400 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
COL4A5P29400 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A5P29400 MIR1247-201ENST00000408206 136 ntBASIC19.56■□□□□ 0.72
COL4A5P29400 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 AC104596.2-201ENST00000512793 793 ntBASIC19.56■□□□□ 0.72
COL4A5P29400 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.56■□□□□ 0.72
COL4A5P29400 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 C2orf69P2-201ENST00000562032 1123 ntBASIC19.56■□□□□ 0.72
COL4A5P29400 AL359711.2-201ENST00000563105 872 ntBASIC19.56■□□□□ 0.72
COL4A5P29400 AC036164.1-201ENST00000570544 333 ntBASIC19.56■□□□□ 0.72
COL4A5P29400 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A5P29400 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A5P29400 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A5P29400 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL4A5P29400 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A5P29400 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A5P29400 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
COL4A5P29400 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
COL4A5P29400 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
COL4A5P29400 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL4A5P29400 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A5P29400 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms