Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AL589987.1-201ENST00000453380 819 ntBASIC17.91■□□□□ 0.46
LRCH3Q96II8 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AC105021.1-202ENST00000570572 669 ntBASIC17.91■□□□□ 0.46
LRCH3Q96II8 AC073389.1-201ENST00000595595 795 ntBASIC17.91■□□□□ 0.46
LRCH3Q96II8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.91■□□□□ 0.46
LRCH3Q96II8 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LRCH3Q96II8 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 MEP1AP4-201ENST00000423244 1087 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 KRT8P13-201ENST00000463294 1010 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 AC233724.13-201ENST00000598383 410 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 RPSAP52-203ENST00000622976 1023 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 AC015967.2-201ENST00000624092 234 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 AC006435.4-201ENST00000625037 234 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 AL356737.1-201ENST00000634391 234 ntBASIC17.9■□□□□ 0.46
LRCH3Q96II8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LRCH3Q96II8 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.9■□□□□ 0.46
LRCH3Q96II8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms