Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDX1P47902 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CDX1P47902 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.68□□□□□ -0.22
CDX1P47902 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.67□□□□□ -0.22
CDX1P47902 AC093909.1-201ENST00000504731 1122 ntBASIC13.67□□□□□ -0.22
CDX1P47902 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC13.67□□□□□ -0.22
CDX1P47902 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC13.67□□□□□ -0.22
CDX1P47902 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.67□□□□□ -0.22
CDX1P47902 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.67□□□□□ -0.22
CDX1P47902 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 AC100803.2-201ENST00000562459 1963 ntBASIC13.67□□□□□ -0.22
CDX1P47902 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDX1P47902 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.67□□□□□ -0.22
CDX1P47902 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 HLA-A-201ENST00000376802 1334 ntBASIC13.66□□□□□ -0.22
CDX1P47902 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CDX1P47902 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.66□□□□□ -0.22
CDX1P47902 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.66□□□□□ -0.22
CDX1P47902 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.66□□□□□ -0.22
CDX1P47902 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC13.66□□□□□ -0.22
CDX1P47902 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.66□□□□□ -0.22
CDX1P47902 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.66□□□□□ -0.22
CDX1P47902 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.66□□□□□ -0.22
CDX1P47902 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
CDX1P47902 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.66□□□□□ -0.22
CDX1P47902 AL365203.3-201ENST00000609742 2057 ntBASIC13.66□□□□□ -0.22
CDX1P47902 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDX1P47902 AL355312.1-201ENST00000407115 2176 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms