Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
SMARCA1P28370 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 LTB4R2-202ENST00000528054 3092 ntBASIC19■□□□□ 0.63
SMARCA1P28370 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 U82695.1-201ENST00000635752 1889 ntBASIC19■□□□□ 0.63
SMARCA1P28370 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMARCA1P28370 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
SMARCA1P28370 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19■□□□□ 0.63
SMARCA1P28370 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SMARCA1P28370 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.99■□□□□ 0.63
SMARCA1P28370 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.99■□□□□ 0.63
SMARCA1P28370 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.99■□□□□ 0.63
SMARCA1P28370 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
SMARCA1P28370 AL139400.1-201ENST00000366220 510 ntBASIC18.99■□□□□ 0.63
SMARCA1P28370 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.99■□□□□ 0.63
SMARCA1P28370 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
SMARCA1P28370 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.99■□□□□ 0.63
SMARCA1P28370 TSEN15P1-201ENST00000423257 515 ntBASIC18.99■□□□□ 0.63
SMARCA1P28370 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.99■□□□□ 0.63
SMARCA1P28370 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.99■□□□□ 0.63
SMARCA1P28370 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
SMARCA1P28370 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.99■□□□□ 0.63
SMARCA1P28370 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SMARCA1P28370 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMARCA1P28370 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SMARCA1P28370 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SMARCA1P28370 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
SMARCA1P28370 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
SMARCA1P28370 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.98■□□□□ 0.63
SMARCA1P28370 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.98■□□□□ 0.63
SMARCA1P28370 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.98■□□□□ 0.63
SMARCA1P28370 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.98■□□□□ 0.63
SMARCA1P28370 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.98■□□□□ 0.63
SMARCA1P28370 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 ALG1L8P-201ENST00000533887 760 ntBASIC18.98■□□□□ 0.63
SMARCA1P28370 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.98■□□□□ 0.63
SMARCA1P28370 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SMARCA1P28370 AC015911.4-201ENST00000588022 1070 ntBASIC18.98■□□□□ 0.63
SMARCA1P28370 AC092171.3-201ENST00000610122 2651 ntBASIC18.98■□□□□ 0.63
SMARCA1P28370 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMARCA1P28370 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SMARCA1P28370 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.98■□□□□ 0.63
SMARCA1P28370 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SMARCA1P28370 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.98■□□□□ 0.63
SMARCA1P28370 KRT18P28-201ENST00000453838 1332 ntBASIC18.98■□□□□ 0.63
SMARCA1P28370 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms