Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 NKAPP1-205ENST00000585790 367 ntBASIC15.02■□□□□ -0
PTP4A1Q93096 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.02■□□□□ -0
PTP4A1Q93096 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PTP4A1Q93096 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
PTP4A1Q93096 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.02□□□□□ -0.01
PTP4A1Q93096 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
PTP4A1Q93096 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
PTP4A1Q93096 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
PTP4A1Q93096 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PTP4A1Q93096 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.02□□□□□ -0.01
PTP4A1Q93096 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 AC106795.1-205ENST00000512851 1056 ntBASIC15.01□□□□□ -0.01
PTP4A1Q93096 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 AL732292.2-201ENST00000609649 430 ntBASIC15.01□□□□□ -0.01
PTP4A1Q93096 AL022326.1-202ENST00000641533 845 ntBASIC15.01□□□□□ -0.01
PTP4A1Q93096 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 AL603832.2-201ENST00000566195 2125 ntBASIC15.01□□□□□ -0.01
PTP4A1Q93096 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PTP4A1Q93096 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTP4A1Q93096 AL031731.1-201ENST00000642131 2094 ntBASIC15.01□□□□□ -0.01
PTP4A1Q93096 KRT8P39-201ENST00000396270 1433 ntBASIC15□□□□□ -0.01
PTP4A1Q93096 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15□□□□□ -0.01
PTP4A1Q93096 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15□□□□□ -0.01
PTP4A1Q93096 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15□□□□□ -0.01
PTP4A1Q93096 RBM17P3-201ENST00000417687 1192 ntBASIC15□□□□□ -0.01
PTP4A1Q93096 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15□□□□□ -0.01
PTP4A1Q93096 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15□□□□□ -0.01
PTP4A1Q93096 MPDU1-223ENST00000582151 728 ntBASIC15□□□□□ -0.01
PTP4A1Q93096 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15□□□□□ -0.01
PTP4A1Q93096 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15□□□□□ -0.01
PTP4A1Q93096 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15□□□□□ -0.01
PTP4A1Q93096 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 PC-214ENST00000628663 1470 ntTSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15□□□□□ -0.01
PTP4A1Q93096 GGT4P-201ENST00000623672 1708 ntBASIC15□□□□□ -0.01
PTP4A1Q93096 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
PTP4A1Q93096 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
PTP4A1Q93096 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTP4A1Q93096 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
PTP4A1Q93096 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
PTP4A1Q93096 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTP4A1Q93096 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
PTP4A1Q93096 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.99□□□□□ -0.01
PTP4A1Q93096 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTP4A1Q93096 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTP4A1Q93096 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTP4A1Q93096 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTP4A1Q93096 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTP4A1Q93096 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTP4A1Q93096 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms