Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.79□□□□□ -0.04
SKA3Q8IX90 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 PMS2P1-201ENST00000431037 1228 ntBASIC14.79□□□□□ -0.04
SKA3Q8IX90 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 FAM185BP-201ENST00000443595 716 ntBASIC14.79□□□□□ -0.04
SKA3Q8IX90 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 MPDU1-223ENST00000582151 728 ntBASIC14.79□□□□□ -0.04
SKA3Q8IX90 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SKA3Q8IX90 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
SKA3Q8IX90 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 AC006277.1-201ENST00000624348 1610 ntBASIC14.78□□□□□ -0.04
SKA3Q8IX90 LINC00895-201ENST00000629028 1637 ntBASIC14.78□□□□□ -0.04
SKA3Q8IX90 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 ZNF259P1-201ENST00000407656 1365 ntBASIC14.78□□□□□ -0.04
SKA3Q8IX90 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 HCG4B-203ENST00000450128 991 ntBASIC14.78□□□□□ -0.04
SKA3Q8IX90 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 CXCL1P1-201ENST00000502804 216 ntBASIC14.78□□□□□ -0.04
SKA3Q8IX90 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 AC005412.3-201ENST00000580309 715 ntBASIC14.78□□□□□ -0.04
SKA3Q8IX90 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SKA3Q8IX90 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SKA3Q8IX90 SLC22A20-204ENST00000530038 1673 ntBASIC14.77□□□□□ -0.04
SKA3Q8IX90 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.77□□□□□ -0.04
SKA3Q8IX90 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.77□□□□□ -0.04
SKA3Q8IX90 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.77□□□□□ -0.04
SKA3Q8IX90 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms