Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.66■□□□□ 0.42
BRCC3P46736 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.66■□□□□ 0.42
BRCC3P46736 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCC3P46736 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.66■□□□□ 0.42
BRCC3P46736 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCC3P46736 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCC3P46736 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
BRCC3P46736 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCC3P46736 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRCC3P46736 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCC3P46736 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCC3P46736 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BRCC3P46736 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BRCC3P46736 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
BRCC3P46736 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.65■□□□□ 0.42
BRCC3P46736 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BRCC3P46736 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
BRCC3P46736 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
BRCC3P46736 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.65■□□□□ 0.42
BRCC3P46736 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.65■□□□□ 0.42
BRCC3P46736 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 AC097493.3-201ENST00000509725 367 ntBASIC17.65■□□□□ 0.42
BRCC3P46736 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 AC069120.2-201ENST00000524091 540 ntBASIC17.65■□□□□ 0.42
BRCC3P46736 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.65■□□□□ 0.42
BRCC3P46736 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.65■□□□□ 0.42
BRCC3P46736 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.65■□□□□ 0.42
BRCC3P46736 AC105020.1-201ENST00000435356 2205 ntBASIC17.65■□□□□ 0.42
BRCC3P46736 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCC3P46736 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
BRCC3P46736 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.65■□□□□ 0.42
BRCC3P46736 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.65■□□□□ 0.42
BRCC3P46736 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
BRCC3P46736 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
BRCC3P46736 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
BRCC3P46736 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.64■□□□□ 0.41
BRCC3P46736 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.64■□□□□ 0.41
BRCC3P46736 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
BRCC3P46736 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
BRCC3P46736 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
BRCC3P46736 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
BRCC3P46736 BASP1P1-201ENST00000430708 665 ntBASIC17.64■□□□□ 0.41
BRCC3P46736 AC092580.3-201ENST00000430932 139 ntBASIC17.64■□□□□ 0.41
BRCC3P46736 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.64■□□□□ 0.41
BRCC3P46736 MIR4745-201ENST00000577608 62 ntBASIC17.64■□□□□ 0.41
BRCC3P46736 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.64■□□□□ 0.41
BRCC3P46736 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.64■□□□□ 0.41
BRCC3P46736 SPTSSB-204ENST00000617024 1292 ntBASIC17.64■□□□□ 0.41
BRCC3P46736 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.64■□□□□ 0.41
BRCC3P46736 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
BRCC3P46736 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
BRCC3P46736 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.64■□□□□ 0.41
BRCC3P46736 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
BRCC3P46736 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.64■□□□□ 0.41
BRCC3P46736 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
BRCC3P46736 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
BRCC3P46736 AL031731.1-201ENST00000642131 2094 ntBASIC17.63■□□□□ 0.41
BRCC3P46736 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCC3P46736 RNF216P1-203ENST00000404404 2427 ntBASIC17.63■□□□□ 0.41
BRCC3P46736 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCC3P46736 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCC3P46736 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCC3P46736 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCC3P46736 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCC3P46736 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms