Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN9P43378 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN9P43378 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN9P43378 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN9P43378 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN9P43378 AC005052.1-201ENST00000625181 2492 ntBASIC17.29■□□□□ 0.36
PTPN9P43378 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
PTPN9P43378 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
PTPN9P43378 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN9P43378 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PTPN9P43378 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.29■□□□□ 0.36
PTPN9P43378 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
PTPN9P43378 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
PTPN9P43378 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 AC002056.1-201ENST00000395613 760 ntBASIC17.28■□□□□ 0.36
PTPN9P43378 MIR940-201ENST00000401276 94 ntBASIC17.28■□□□□ 0.36
PTPN9P43378 AC023274.1-201ENST00000418278 595 ntBASIC17.28■□□□□ 0.36
PTPN9P43378 AP000347.1-202ENST00000435868 847 ntBASIC17.28■□□□□ 0.36
PTPN9P43378 POLD2P1-201ENST00000511220 997 ntBASIC17.28■□□□□ 0.36
PTPN9P43378 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN9P43378 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN9P43378 AL078644.1-201ENST00000609881 752 ntBASIC17.28■□□□□ 0.36
PTPN9P43378 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN9P43378 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN9P43378 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
PTPN9P43378 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN9P43378 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN9P43378 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PTPN9P43378 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN9P43378 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN9P43378 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.36
PTPN9P43378 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.27■□□□□ 0.36
PTPN9P43378 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.27■□□□□ 0.36
PTPN9P43378 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.27■□□□□ 0.36
PTPN9P43378 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.27■□□□□ 0.36
PTPN9P43378 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.27■□□□□ 0.36
PTPN9P43378 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.27■□□□□ 0.36
PTPN9P43378 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PTPN9P43378 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.27■□□□□ 0.36
PTPN9P43378 AC112191.1-201ENST00000523689 701 ntBASIC17.27■□□□□ 0.36
PTPN9P43378 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.27■□□□□ 0.36
PTPN9P43378 AC002347.1-201ENST00000569543 541 ntBASIC17.27■□□□□ 0.36
PTPN9P43378 AL161645.1-201ENST00000622716 1255 ntBASIC17.27■□□□□ 0.36
PTPN9P43378 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.27■□□□□ 0.36
PTPN9P43378 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.27■□□□□ 0.36
PTPN9P43378 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN9P43378 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
PTPN9P43378 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN9P43378 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN9P43378 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PTPN9P43378 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN9P43378 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN9P43378 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.27■□□□□ 0.35
PTPN9P43378 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN9P43378 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN9P43378 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.27■□□□□ 0.35
PTPN9P43378 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN9P43378 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PTPN9P43378 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.26■□□□□ 0.35
PTPN9P43378 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.26■□□□□ 0.35
PTPN9P43378 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN9P43378 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN9P43378 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.26■□□□□ 0.35
PTPN9P43378 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN9P43378 MCCD1P2-201ENST00000423228 335 ntBASIC17.26■□□□□ 0.35
PTPN9P43378 AC004832.2-201ENST00000426397 482 ntBASIC17.26■□□□□ 0.35
PTPN9P43378 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.26■□□□□ 0.35
PTPN9P43378 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
PTPN9P43378 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms