Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
UPK1AO00322 AP002414.3-201ENST00000589352 1468 ntBASIC15.83■□□□□ 0.12
UPK1AO00322 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 AC126177.1-201ENST00000547829 2218 ntBASIC15.83■□□□□ 0.12
UPK1AO00322 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
UPK1AO00322 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.83■□□□□ 0.12
UPK1AO00322 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
UPK1AO00322 LINC00895-201ENST00000629028 1637 ntBASIC15.83■□□□□ 0.12
UPK1AO00322 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.83■□□□□ 0.12
UPK1AO00322 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
UPK1AO00322 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
UPK1AO00322 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
UPK1AO00322 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.82■□□□□ 0.12
UPK1AO00322 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.82■□□□□ 0.12
UPK1AO00322 SLC25A6P2-201ENST00000497974 877 ntBASIC15.82■□□□□ 0.12
UPK1AO00322 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
UPK1AO00322 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.82■□□□□ 0.12
UPK1AO00322 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
UPK1AO00322 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 AL356488.2-201ENST00000602755 427 ntBASIC15.82■□□□□ 0.12
UPK1AO00322 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 MIR1199-201ENST00000621445 119 ntBASIC15.82■□□□□ 0.12
UPK1AO00322 REXO1L3P-201ENST00000622202 1288 ntBASIC15.82■□□□□ 0.12
UPK1AO00322 FAM215A-202ENST00000632077 792 ntBASIC15.82■□□□□ 0.12
UPK1AO00322 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.82■□□□□ 0.12
UPK1AO00322 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.82■□□□□ 0.12
UPK1AO00322 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 AC023824.1-201ENST00000562945 2975 ntBASIC15.82■□□□□ 0.12
UPK1AO00322 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
UPK1AO00322 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.82■□□□□ 0.12
UPK1AO00322 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
UPK1AO00322 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.81■□□□□ 0.12
UPK1AO00322 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
UPK1AO00322 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.81■□□□□ 0.12
UPK1AO00322 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.81■□□□□ 0.12
UPK1AO00322 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.81■□□□□ 0.12
UPK1AO00322 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 IGHV3-65-201ENST00000523210 341 ntBASIC15.81■□□□□ 0.12
UPK1AO00322 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.81■□□□□ 0.12
UPK1AO00322 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UPK1AO00322 AC008667.4-201ENST00000607370 168 ntBASIC15.81■□□□□ 0.12
UPK1AO00322 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms