Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SF3A1Q15459 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.32■□□□□ 0.68
SF3A1Q15459 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.32■□□□□ 0.68
SF3A1Q15459 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 LINC01711-201ENST00000598340 967 ntBASIC19.32■□□□□ 0.68
SF3A1Q15459 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.32■□□□□ 0.68
SF3A1Q15459 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.32■□□□□ 0.68
SF3A1Q15459 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 AC006538.1-201ENST00000567905 1585 ntBASIC19.32■□□□□ 0.68
SF3A1Q15459 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.32■□□□□ 0.68
SF3A1Q15459 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.31■□□□□ 0.68
SF3A1Q15459 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.31■□□□□ 0.68
SF3A1Q15459 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.31■□□□□ 0.68
SF3A1Q15459 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.31■□□□□ 0.68
SF3A1Q15459 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SF3A1Q15459 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.31■□□□□ 0.68
SF3A1Q15459 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SF3A1Q15459 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.31■□□□□ 0.68
SF3A1Q15459 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.31■□□□□ 0.68
SF3A1Q15459 AC006277.1-201ENST00000624348 1610 ntBASIC19.31■□□□□ 0.68
SF3A1Q15459 CYP2T1P-202ENST00000641596 2535 ntBASIC19.31■□□□□ 0.68
SF3A1Q15459 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.31■□□□□ 0.68
SF3A1Q15459 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.31■□□□□ 0.68
SF3A1Q15459 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SF3A1Q15459 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SF3A1Q15459 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.3■□□□□ 0.68
SF3A1Q15459 ELK2BP-201ENST00000415014 1224 ntBASIC19.3■□□□□ 0.68
SF3A1Q15459 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.3■□□□□ 0.68
SF3A1Q15459 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 HLA-J-202ENST00000469281 1241 ntBASIC19.3■□□□□ 0.68
SF3A1Q15459 KRT18P56-201ENST00000507275 550 ntBASIC19.3■□□□□ 0.68
SF3A1Q15459 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.3■□□□□ 0.68
SF3A1Q15459 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.3■□□□□ 0.68
SF3A1Q15459 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.3■□□□□ 0.68
SF3A1Q15459 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 TOP3BP1-201ENST00000420768 1380 ntBASIC19.3■□□□□ 0.68
SF3A1Q15459 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.3■□□□□ 0.68
SF3A1Q15459 AC068587.6-202ENST00000641839 5619 ntBASIC19.3■□□□□ 0.68
SF3A1Q15459 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC19.3■□□□□ 0.68
SF3A1Q15459 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SF3A1Q15459 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SF3A1Q15459 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SF3A1Q15459 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms