Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CIITAP33076 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.74■□□□□ 0.59
CIITAP33076 AC092183.1-201ENST00000469884 875 ntBASIC18.74■□□□□ 0.59
CIITAP33076 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
CIITAP33076 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.74■□□□□ 0.59
CIITAP33076 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.74■□□□□ 0.59
CIITAP33076 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.73■□□□□ 0.59
CIITAP33076 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.73■□□□□ 0.59
CIITAP33076 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CIITAP33076 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.73■□□□□ 0.59
CIITAP33076 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CIITAP33076 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.73■□□□□ 0.59
CIITAP33076 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.73■□□□□ 0.59
CIITAP33076 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.73■□□□□ 0.59
CIITAP33076 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.73■□□□□ 0.59
CIITAP33076 AP000842.3-202ENST00000569238 1080 ntBASIC18.73■□□□□ 0.59
CIITAP33076 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.73■□□□□ 0.59
CIITAP33076 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.73■□□□□ 0.59
CIITAP33076 PRORSD1P-202ENST00000563365 2154 ntBASIC18.73■□□□□ 0.59
CIITAP33076 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.73■□□□□ 0.59
CIITAP33076 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.73■□□□□ 0.59
CIITAP33076 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CIITAP33076 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CIITAP33076 AC073439.1-201ENST00000624121 1774 ntBASIC18.73■□□□□ 0.59
CIITAP33076 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.73■□□□□ 0.59
CIITAP33076 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.72■□□□□ 0.59
CIITAP33076 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.72■□□□□ 0.59
CIITAP33076 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CIITAP33076 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.72■□□□□ 0.59
CIITAP33076 AC142381.1-201ENST00000426099 345 ntBASIC18.72■□□□□ 0.59
CIITAP33076 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 FAM58DP-201ENST00000428076 619 ntBASIC18.72■□□□□ 0.59
CIITAP33076 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.72■□□□□ 0.59
CIITAP33076 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 AC023141.5-201ENST00000458585 616 ntBASIC18.72■□□□□ 0.59
CIITAP33076 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.72■□□□□ 0.59
CIITAP33076 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.72■□□□□ 0.59
CIITAP33076 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.72■□□□□ 0.59
CIITAP33076 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.72■□□□□ 0.59
CIITAP33076 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.72■□□□□ 0.59
CIITAP33076 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.72■□□□□ 0.59
CIITAP33076 AC009093.7-201ENST00000623853 1223 ntBASIC18.72■□□□□ 0.59
CIITAP33076 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.72■□□□□ 0.59
CIITAP33076 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CIITAP33076 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.72■□□□□ 0.59
CIITAP33076 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CIITAP33076 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.71■□□□□ 0.59
CIITAP33076 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 PCDHA12-202ENST00000613593 2588 ntBASIC18.71■□□□□ 0.59
CIITAP33076 FOXO1B-201ENST00000504678 1527 ntBASIC18.71■□□□□ 0.59
CIITAP33076 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.71■□□□□ 0.59
CIITAP33076 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CIITAP33076 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.71■□□□□ 0.59
CIITAP33076 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.71■□□□□ 0.59
CIITAP33076 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms