Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.94■■□□□ 1.42
TM9SF3Q9HD45 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TM9SF3Q9HD45 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.94■■□□□ 1.42
TM9SF3Q9HD45 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.94■■□□□ 1.42
TM9SF3Q9HD45 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
TM9SF3Q9HD45 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.93■■□□□ 1.42
TM9SF3Q9HD45 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TM9SF3Q9HD45 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TM9SF3Q9HD45 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
TM9SF3Q9HD45 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
TM9SF3Q9HD45 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TM9SF3Q9HD45 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.92■■□□□ 1.42
TM9SF3Q9HD45 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TM9SF3Q9HD45 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TM9SF3Q9HD45 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TM9SF3Q9HD45 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
TM9SF3Q9HD45 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TM9SF3Q9HD45 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.91■■□□□ 1.42
TM9SF3Q9HD45 AC022616.5-201ENST00000518796 181 ntBASIC23.91■■□□□ 1.42
TM9SF3Q9HD45 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.91■■□□□ 1.42
TM9SF3Q9HD45 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
TM9SF3Q9HD45 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
TM9SF3Q9HD45 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TM9SF3Q9HD45 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.89■■□□□ 1.42
TM9SF3Q9HD45 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TM9SF3Q9HD45 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TM9SF3Q9HD45 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.89■■□□□ 1.41
TM9SF3Q9HD45 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
TM9SF3Q9HD45 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TM9SF3Q9HD45 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
TM9SF3Q9HD45 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
TM9SF3Q9HD45 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
TM9SF3Q9HD45 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TM9SF3Q9HD45 KRT125P-201ENST00000546827 989 ntBASIC23.86■■□□□ 1.41
TM9SF3Q9HD45 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 AC019069.1-201ENST00000610008 1333 ntBASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 BX664725.1-201ENST00000438252 379 ntBASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 AC135731.1-201ENST00000569415 2548 ntBASIC23.85■■□□□ 1.41
TM9SF3Q9HD45 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.84■■□□□ 1.41
TM9SF3Q9HD45 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TM9SF3Q9HD45 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.84■■□□□ 1.41
TM9SF3Q9HD45 MIR4787-201ENST00000607364 84 ntBASIC23.84■■□□□ 1.41
TM9SF3Q9HD45 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
TM9SF3Q9HD45 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
TM9SF3Q9HD45 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TM9SF3Q9HD45 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 KRT18P24-201ENST00000344739 1156 ntBASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 AC142472.1-201ENST00000612013 1741 ntBASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
TM9SF3Q9HD45 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.82■■□□□ 1.4
TM9SF3Q9HD45 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TM9SF3Q9HD45 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.81■■□□□ 1.4
TM9SF3Q9HD45 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TM9SF3Q9HD45 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TM9SF3Q9HD45 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.8■■□□□ 1.4
TM9SF3Q9HD45 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TM9SF3Q9HD45 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms