Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC33.79■■■■□ 3
MSH6P52701 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC33.78■■■■□ 3
MSH6P52701 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC33.78■■■■□ 3
MSH6P52701 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC33.78■■■■□ 3
MSH6P52701 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC33.78■■■■□ 3
MSH6P52701 AL139393.2-201ENST00000608721 2025 ntBASIC33.78■■■■□ 3
MSH6P52701 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
MSH6P52701 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC33.78■■■■□ 3
MSH6P52701 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC33.78■■■■□ 3
MSH6P52701 EXOG-217ENST00000630638 197 ntTSL 5 BASIC33.78■■■■□ 3
MSH6P52701 TK2-202ENST00000417693 1046 ntTSL 2 BASIC33.77■■■■□ 3
MSH6P52701 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC33.77■■■■□ 3
MSH6P52701 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
MSH6P52701 AK3-203ENST00000447596 705 ntTSL 2 BASIC33.76■■■■□ 3
MSH6P52701 LGR4-203ENST00000480977 492 ntTSL 2 BASIC33.76■■■■□ 3
MSH6P52701 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC33.76■■■■□ 3
MSH6P52701 SENP5-202ENST00000419026 973 ntTSL 3 BASIC33.75■■■□□ 2.99
MSH6P52701 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
MSH6P52701 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC33.75■■■□□ 2.99
MSH6P52701 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
MSH6P52701 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
MSH6P52701 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
MSH6P52701 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
MSH6P52701 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
MSH6P52701 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC33.73■■■□□ 2.99
MSH6P52701 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC33.73■■■□□ 2.99
MSH6P52701 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
MSH6P52701 PBX2P1-201ENST00000493219 1291 ntBASIC33.72■■■□□ 2.99
MSH6P52701 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
MSH6P52701 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC33.71■■■□□ 2.99
MSH6P52701 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC33.71■■■□□ 2.99
MSH6P52701 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC33.71■■■□□ 2.99
MSH6P52701 RASSF1-AS1-201ENST00000629828 790 ntBASIC33.71■■■□□ 2.99
MSH6P52701 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC33.7■■■□□ 2.98
MSH6P52701 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.98
MSH6P52701 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC33.7■■■□□ 2.98
MSH6P52701 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC33.69■■■□□ 2.98
MSH6P52701 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC33.69■■■□□ 2.98
MSH6P52701 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC33.69■■■□□ 2.98
MSH6P52701 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC33.68■■■□□ 2.98
MSH6P52701 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
MSH6P52701 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC33.67■■■□□ 2.98
MSH6P52701 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC33.67■■■□□ 2.98
MSH6P52701 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC33.67■■■□□ 2.98
MSH6P52701 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
MSH6P52701 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC33.67■■■□□ 2.98
MSH6P52701 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC33.67■■■□□ 2.98
MSH6P52701 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC33.66■■■□□ 2.98
MSH6P52701 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC33.66■■■□□ 2.98
MSH6P52701 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC33.66■■■□□ 2.98
MSH6P52701 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC33.66■■■□□ 2.98
MSH6P52701 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC33.66■■■□□ 2.98
MSH6P52701 AL031432.3-201ENST00000607698 485 ntBASIC33.66■■■□□ 2.98
MSH6P52701 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC33.66■■■□□ 2.98
MSH6P52701 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC33.66■■■□□ 2.98
MSH6P52701 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC33.65■■■□□ 2.98
MSH6P52701 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC33.65■■■□□ 2.98
MSH6P52701 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC33.65■■■□□ 2.98
MSH6P52701 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC33.65■■■□□ 2.98
MSH6P52701 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC33.65■■■□□ 2.98
MSH6P52701 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC33.65■■■□□ 2.98
MSH6P52701 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC33.64■■■□□ 2.98
MSH6P52701 SUDS3P1-201ENST00000505831 966 ntBASIC33.64■■■□□ 2.98
MSH6P52701 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC33.64■■■□□ 2.98
MSH6P52701 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
MSH6P52701 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC33.63■■■□□ 2.97
MSH6P52701 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC33.63■■■□□ 2.97
MSH6P52701 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC33.63■■■□□ 2.97
MSH6P52701 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC33.63■■■□□ 2.97
MSH6P52701 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
MSH6P52701 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC33.62■■■□□ 2.97
MSH6P52701 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC33.62■■■□□ 2.97
MSH6P52701 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC33.62■■■□□ 2.97
MSH6P52701 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC33.61■■■□□ 2.97
MSH6P52701 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC33.6■■■□□ 2.97
MSH6P52701 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
MSH6P52701 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC33.6■■■□□ 2.97
MSH6P52701 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC33.6■■■□□ 2.97
MSH6P52701 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
MSH6P52701 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC33.6■■■□□ 2.97
MSH6P52701 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
MSH6P52701 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
MSH6P52701 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC33.6■■■□□ 2.97
MSH6P52701 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
MSH6P52701 CD72-202ENST00000378430 585 ntTSL 3 BASIC33.59■■■□□ 2.97
MSH6P52701 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC33.59■■■□□ 2.97
MSH6P52701 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC33.59■■■□□ 2.97
MSH6P52701 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC33.59■■■□□ 2.97
MSH6P52701 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC33.59■■■□□ 2.97
MSH6P52701 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
MSH6P52701 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC33.58■■■□□ 2.97
MSH6P52701 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
MSH6P52701 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC33.57■■■□□ 2.96
MSH6P52701 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC33.57■■■□□ 2.96
MSH6P52701 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC33.57■■■□□ 2.96
MSH6P52701 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC33.56■■■□□ 2.96
MSH6P52701 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
MSH6P52701 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC33.56■■■□□ 2.96
MSH6P52701 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC33.56■■■□□ 2.96
MSH6P52701 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC33.56■■■□□ 2.96
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms