Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PIF1Q9H611 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.04■□□□□ 0.16
PIF1Q9H611 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.04■□□□□ 0.16
PIF1Q9H611 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PIF1Q9H611 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PIF1Q9H611 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PIF1Q9H611 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PIF1Q9H611 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
PIF1Q9H611 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PIF1Q9H611 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PIF1Q9H611 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PIF1Q9H611 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.04■□□□□ 0.16
PIF1Q9H611 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
PIF1Q9H611 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.03■□□□□ 0.16
PIF1Q9H611 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PIF1Q9H611 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PIF1Q9H611 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 BX276092.5-203ENST00000456199 560 ntBASIC16.03■□□□□ 0.16
PIF1Q9H611 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.03■□□□□ 0.16
PIF1Q9H611 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.03■□□□□ 0.16
PIF1Q9H611 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.03■□□□□ 0.16
PIF1Q9H611 AC148477.5-201ENST00000625164 1645 ntBASIC16.03■□□□□ 0.16
PIF1Q9H611 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.03■□□□□ 0.16
PIF1Q9H611 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 AL365203.3-201ENST00000609742 2057 ntBASIC16.03■□□□□ 0.16
PIF1Q9H611 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PIF1Q9H611 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PIF1Q9H611 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.02■□□□□ 0.16
PIF1Q9H611 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.02■□□□□ 0.16
PIF1Q9H611 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.02■□□□□ 0.16
PIF1Q9H611 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.02■□□□□ 0.16
PIF1Q9H611 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
PIF1Q9H611 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PIF1Q9H611 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
PIF1Q9H611 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.02■□□□□ 0.16
PIF1Q9H611 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.02■□□□□ 0.16
PIF1Q9H611 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.02■□□□□ 0.16
PIF1Q9H611 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 AP005901.3-202ENST00000581653 237 ntBASIC16.02■□□□□ 0.16
PIF1Q9H611 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.02■□□□□ 0.16
PIF1Q9H611 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.02■□□□□ 0.16
PIF1Q9H611 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PIF1Q9H611 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.02■□□□□ 0.16
PIF1Q9H611 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PIF1Q9H611 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
PIF1Q9H611 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PIF1Q9H611 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.02■□□□□ 0.15
PIF1Q9H611 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PIF1Q9H611 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PIF1Q9H611 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.02■□□□□ 0.15
PIF1Q9H611 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.02■□□□□ 0.15
PIF1Q9H611 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
PIF1Q9H611 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PIF1Q9H611 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PIF1Q9H611 ME2P1-201ENST00000426028 1970 ntBASIC16.02■□□□□ 0.15
PIF1Q9H611 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
PIF1Q9H611 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms